Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   H8R35_RS00910 Genome accession   NZ_CP084085
Coordinates   177989..178426 (-) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain MS2167     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 172989..183426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R35_RS00895 (H8R35_000139) ispG 173531..174604 (-) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  H8R35_RS00900 (H8R35_000140) cipA 174750..176144 (+) 1395 WP_002874687.1 DUF2972 domain-containing protein -
  H8R35_RS00905 (H8R35_000141) priA 176154..178007 (-) 1854 WP_002874688.1 primosomal protein N' -
  H8R35_RS00910 (H8R35_000142) Cj0683 177989..178426 (-) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H8R35_RS00915 - 178423..178665 (-) 243 WP_002854947.1 hypothetical protein -
  H8R35_RS00920 (H8R35_000143) - 178655..178885 (-) 231 WP_002852327.1 hypothetical protein -
  H8R35_RS00925 (H8R35_000144) uvrB 179039..181012 (+) 1974 WP_002874689.1 excinuclease ABC subunit UvrB -
  H8R35_RS00930 - 181114..181758 (-) 645 WP_250471537.1 DUF4118 domain-containing protein -
  H8R35_RS00935 (H8R35_000145) - 181782..182933 (-) 1152 WP_237961707.1 sensor histidine kinase KdpD -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=609464 H8R35_RS00910 WP_002852324.1 177989..178426(-) (Cj0683) [Campylobacter jejuni strain MS2167]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=609464 H8R35_RS00910 WP_002852324.1 177989..178426(-) (Cj0683) [Campylobacter jejuni strain MS2167]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1