Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   H8R36_RS06555 Genome accession   NZ_CP084084
Coordinates   1248530..1249489 (+) Length   319 a.a.
NCBI ID   WP_002856368.1    Uniprot ID   -
Organism   Campylobacter jejuni strain MS2074     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1230847..1258826 1248530..1249489 within 0


Gene organization within MGE regions


Location: 1230847..1258826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R36_RS06470 (H8R36_001083) pglI 1230847..1231776 (-) 930 WP_002856262.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  H8R36_RS06475 (H8R36_001084) pglH 1231769..1232848 (-) 1080 WP_002911763.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  H8R36_RS06480 pglK 1232845..1234539 (-) 1695 WP_254970035.1 ABC-type lipopolysaccharide transporter PglK -
  H8R36_RS06485 (H8R36_001085) galE 1234533..1235519 (-) 987 WP_002856461.1 UDP-glucose 4-epimerase GalE -
  H8R36_RS06490 (H8R36_001086) - 1235577..1236371 (-) 795 WP_002856546.1 3'-5' exonuclease -
  H8R36_RS06495 (H8R36_001087) waaC 1236437..1237465 (+) 1029 WP_002855693.1 lipopolysaccharide heptosyltransferase I -
  H8R36_RS06500 (H8R36_001088) htrB 1237455..1238342 (+) 888 WP_002855840.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  H8R36_RS06505 (H8R36_001089) - 1238339..1239887 (+) 1549 Protein_1252 glycosyltransferase -
  H8R36_RS06510 (H8R36_001091) - 1239891..1241060 (+) 1170 WP_002852863.1 glycosyltransferase family 2 protein -
  H8R36_RS06515 (H8R36_001092) - 1241130..1242173 (+) 1044 WP_002912176.1 beta-1,4-N-acetylgalactosaminyltransferase -
  H8R36_RS06520 (H8R36_001093) - 1242159..1243064 (-) 906 WP_002852740.1 glycosyltransferase family 2 protein -
  H8R36_RS06525 (H8R36_001094) - 1243153..1244028 (+) 876 WP_002869021.1 alpha-2,3-sialyltransferase -
  H8R36_RS06530 (H8R36_001095) neuB 1244029..1245069 (+) 1041 WP_002870496.1 N-acetylneuraminate synthase -
  H8R36_RS06535 neuC 1245066..1246184 (+) 1119 WP_002911676.1 UDP-N-acetylglucosamine 2-epimerase -
  H8R36_RS06540 (H8R36_001096) - 1246181..1246846 (+) 666 WP_002855897.1 acylneuraminate cytidylyltransferase family protein -
  H8R36_RS06545 (H8R36_001097) - 1246834..1247667 (+) 834 WP_002855772.1 CatB-related O-acetyltransferase -
  H8R36_RS06550 (H8R36_001098) waaV 1247659..1248471 (-) 813 WP_002856066.1 glycosyltransferase family 2 protein -
  H8R36_RS06555 (H8R36_001099) waaF 1248530..1249489 (+) 960 WP_002856368.1 lipopolysaccharide heptosyltransferase II Regulator
  H8R36_RS06560 (H8R36_001100) gmhA 1249470..1250030 (-) 561 WP_002855785.1 D-sedoheptulose 7-phosphate isomerase -
  H8R36_RS06565 (H8R36_001101) rfaE1 1250027..1251412 (-) 1386 WP_002856251.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  H8R36_RS06570 (H8R36_001102) rfaD 1251405..1252358 (-) 954 WP_002856483.1 ADP-glyceromanno-heptose 6-epimerase -
  H8R36_RS06575 (H8R36_001103) gmhB 1252359..1252919 (-) 561 WP_002911679.1 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  H8R36_RS06580 (H8R36_001104) - 1253001..1253303 (+) 303 WP_002852762.1 cytochrome c -
  H8R36_RS06585 (H8R36_001105) ccoS 1253326..1253532 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  H8R36_RS06590 (H8R36_001106) - 1253529..1255886 (-) 2358 WP_079254191.1 heavy metal translocating P-type ATPase -
  H8R36_RS06595 (H8R36_001107) rho 1255995..1257293 (+) 1299 WP_002853705.1 transcription termination factor Rho -
  H8R36_RS06600 (H8R36_001108) dnaX 1257297..1258826 (+) 1530 WP_002855902.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36719.17 Da        Isoelectric Point: 10.1941

>NTDB_id=609452 H8R36_RS06555 WP_002856368.1 1248530..1249489(+) (waaF) [Campylobacter jejuni strain MS2074]
MKIFIHLPTWLGDAVMASPALYAIKEHFKDAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTNFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=609452 H8R36_RS06555 WP_002856368.1 1248530..1249489(+) (waaF) [Campylobacter jejuni strain MS2074]
ATGAAAATTTTTATACACCTTCCAACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
CTTTAAAGATGCCCAGTTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGTTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGACATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAATTTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTACATTTAGATCTAGCTTGCATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(95-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

95.611

100

0.956