Detailed information NTG0609420

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: H8R34_RS03640
• Genome accession: NZ_CP084082
• Coordinates: 712040..712999 (+)
• Length: 319 a.a.
• NCBI ID: WP_042635877.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain MS2058
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 707040..717999

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H8R34_RS03615	neuC	707629..708753 (+)	1125	WP_002868604.1	UDP-N-acetylglucosamine 2-epimerase	-
H8R34_RS03620 (H8R34_000641)	-	708746..709693 (+)	948	WP_042635875.1	glycosyltransferase	-
H8R34_RS03625 (H8R34_000642)	-	709690..710355 (+)	666	WP_002935341.1	acylneuraminate cytidylyltransferase family protein	-
H8R34_RS03630	-	710479..711111 (+)	633	WP_042635876.1	CatB-related O-acetyltransferase	-
H8R34_RS03635 (H8R34_000643)	waaV	711169..711981 (-)	813	WP_002918295.1	glycosyltransferase family 2 protein	-
H8R34_RS03640 (H8R34_000644)	waaF	712040..712999 (+)	960	WP_042635877.1	lipopolysaccharide heptosyltransferase II	Regulator
H8R34_RS03645 (H8R34_000645)	gmhA	712980..713540 (-)	561	WP_002876196.1	D-sedoheptulose 7-phosphate isomerase	-
H8R34_RS03650 (H8R34_000646)	rfaE1	713537..714922 (-)	1386	WP_002910336.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
H8R34_RS03655 (H8R34_000647)	rfaD	714915..715868 (-)	954	WP_002886910.1	ADP-glyceromanno-heptose 6-epimerase	-
H8R34_RS03660 (H8R34_000648)	gmhB	715869..716430 (-)	562	Protein_714	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
H8R34_RS03665 (H8R34_000649)	-	716511..716813 (+)	303	WP_002852762.1	cytochrome c	-
H8R34_RS03670 (H8R34_000650)	ccoS	716836..717042 (-)	207	WP_002852798.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36698.24 Da
• Isoelectric Point: 10.3311

>NTDB_id=609420 H8R34_RS03640 WP_042635877.1 712040..712999(+) (waaF) [Campylobacter jejuni strain MS2058]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFT
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENALSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAILVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHR

Nucleotide

• Length: 960 bp

>NTDB_id=609420 H8R34_RS03640 WP_042635877.1 712040..712999(+) (waaF) [Campylobacter jejuni strain MS2058]
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGTAAAGAACTTGGTAAAATCGATCTTAGCTTTACT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACGCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAACGCAATATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCGATGA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (95-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	94.654	99.687	0.944