Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   H8R33_RS08085 Genome accession   NZ_CP084080
Coordinates   1534337..1534639 (-) Length   100 a.a.
NCBI ID   WP_002875928.1    Uniprot ID   -
Organism   Campylobacter jejuni strain MS2005     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1529337..1539639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R33_RS08050 (H8R33_001352) - 1529750..1530511 (+) 762 WP_002852748.1 ATP-binding protein -
  H8R33_RS08055 (H8R33_001353) - 1530508..1531194 (+) 687 WP_002852847.1 endonuclease III domain-containing protein -
  H8R33_RS08060 (H8R33_001354) thiD 1531191..1532003 (+) 813 WP_002869542.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  H8R33_RS08065 (H8R33_001355) thiE 1531993..1532625 (+) 633 WP_002852670.1 thiamine phosphate synthase -
  H8R33_RS08070 (H8R33_001356) hemD 1532603..1533232 (+) 630 WP_002869541.1 uroporphyrinogen-III synthase -
  H8R33_RS08075 (H8R33_001357) - 1533229..1533681 (-) 453 WP_002859148.1 hypothetical protein -
  H8R33_RS08080 (H8R33_001358) - 1533678..1534340 (-) 663 WP_002858296.1 hypothetical protein -
  H8R33_RS08085 (H8R33_001359) ctsT 1534337..1534639 (-) 303 WP_002875928.1 hypothetical protein Machinery gene
  H8R33_RS08090 (H8R33_001360) proC 1534636..1535367 (-) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  H8R33_RS08095 (H8R33_001361) fliW 1535367..1535756 (-) 390 WP_002852982.1 flagellar assembly protein FliW -
  H8R33_RS08100 (H8R33_001362) - 1535917..1536564 (+) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  H8R33_RS08105 (H8R33_001363) lon 1536581..1538956 (+) 2376 WP_002852988.1 endopeptidase La -
  H8R33_RS08110 (H8R33_001364) rpsR 1539016..1539276 (-) 261 WP_002853032.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 12161.32 Da        Isoelectric Point: 9.0653

>NTDB_id=609410 H8R33_RS08085 WP_002875928.1 1534337..1534639(-) (ctsT) [Campylobacter jejuni strain MS2005]
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFKRLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE

Nucleotide


Download         Length: 303 bp        

>NTDB_id=609410 H8R33_RS08085 WP_002875928.1 1534337..1534639(-) (ctsT) [Campylobacter jejuni strain MS2005]
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTAAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

98

100

0.98