Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   H8R33_RS07740 Genome accession   NZ_CP084080
Coordinates   1465178..1466137 (-) Length   319 a.a.
NCBI ID   WP_254990765.1    Uniprot ID   A0A5T2B3S2
Organism   Campylobacter jejuni strain MS2005     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1460178..1471137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R33_RS07710 (H8R33_001294) ccoS 1461135..1461341 (+) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  H8R33_RS07715 (H8R33_001295) - 1461364..1461666 (-) 303 WP_002852762.1 cytochrome c -
  H8R33_RS07720 (H8R33_001296) gmhB 1461747..1462308 (+) 562 Protein_1496 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  H8R33_RS07725 (H8R33_001297) rfaD 1462309..1463262 (+) 954 WP_002886910.1 ADP-glyceromanno-heptose 6-epimerase -
  H8R33_RS07730 (H8R33_001298) rfaE1 1463255..1464640 (+) 1386 WP_002868598.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  H8R33_RS07735 (H8R33_001299) gmhA 1464637..1465197 (+) 561 WP_002868599.1 D-sedoheptulose 7-phosphate isomerase -
  H8R33_RS07740 (H8R33_001300) waaF 1465178..1466137 (-) 960 WP_254990765.1 lipopolysaccharide heptosyltransferase II Regulator
  H8R33_RS07745 (H8R33_001301) waaV 1466196..1467008 (+) 813 WP_002918295.1 glycosyltransferase family 2 protein -
  H8R33_RS07750 - 1467066..1467698 (-) 633 WP_042635876.1 CatB-related O-acetyltransferase -
  H8R33_RS07755 (H8R33_001302) - 1467822..1468487 (-) 666 WP_002935341.1 acylneuraminate cytidylyltransferase family protein -
  H8R33_RS07760 - 1468484..1469110 (-) 627 Protein_1504 hypothetical protein -
  H8R33_RS07765 (H8R33_001303) - 1469088..1469435 (-) 348 WP_254990766.1 hypothetical protein -
  H8R33_RS07770 neuC 1469428..1470552 (-) 1125 WP_002868604.1 UDP-N-acetylglucosamine 2-epimerase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36738.43 Da        Isoelectric Point: 10.3627

>NTDB_id=609408 H8R33_RS07740 WP_254990765.1 1465178..1466137(-) (waaF) [Campylobacter jejuni strain MS2005]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKVEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAIYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEARNLLKNPHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=609408 H8R33_RS07740 WP_254990765.1 1465178..1466137(-) (waaF) [Campylobacter jejuni strain MS2005]
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCTCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTAGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGTCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATTGCTTTTTGTGATCTTTTCATAACAAATGACAGT
GGTCCTATGCACCTAAGTGCGATTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T2B3S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.357

100

0.944