Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   H8R33_RS01195 Genome accession   NZ_CP084080
Coordinates   234507..234944 (-) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain MS2005     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 229507..239944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8R33_RS01180 (H8R33_000192) ispG 230050..231123 (-) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  H8R33_RS01185 cipA 231269..232662 (+) 1394 Protein_231 DUF2972 domain-containing protein -
  H8R33_RS01190 (H8R33_000193) priA 232672..234525 (-) 1854 WP_002860009.1 primosomal protein N' -
  H8R33_RS01195 (H8R33_000194) Cj0683 234507..234944 (-) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  H8R33_RS01200 - 234941..235183 (-) 243 WP_002854947.1 hypothetical protein -
  H8R33_RS01205 (H8R33_000195) - 235173..235403 (-) 231 WP_002852327.1 hypothetical protein -
  H8R33_RS01210 (H8R33_000196) uvrB 235557..237530 (+) 1974 WP_042635827.1 excinuclease ABC subunit UvrB -
  H8R33_RS01215 - 237632..237958 (-) 327 WP_224328091.1 hypothetical protein -
  H8R33_RS01220 - 237934..238050 (-) 117 WP_257406933.1 hypothetical protein -
  H8R33_RS01225 - 238094..238282 (-) 189 WP_230099897.1 DUF4118 domain-containing protein -
  H8R33_RS01230 - 238306..239455 (-) 1150 Protein_240 sensor histidine kinase KdpD -
  H8R33_RS01240 - 239458..239763 (-) 306 Protein_241 potassium-transporting ATPase subunit C -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=609386 H8R33_RS01195 WP_002852324.1 234507..234944(-) (Cj0683) [Campylobacter jejuni strain MS2005]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=609386 H8R33_RS01195 WP_002852324.1 234507..234944(-) (Cj0683) [Campylobacter jejuni strain MS2005]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1