Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NML25_RS05735 Genome accession   NZ_CP101222
Coordinates   1204170..1204775 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain EC21Z-144     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1199170..1209775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NML25_RS05705 (NML25_05705) rsmS 1199872..1200036 (-) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  NML25_RS05710 (NML25_05710) priC 1200050..1200577 (-) 528 WP_001522038.1 primosomal replication protein N'' -
  NML25_RS05715 (NML25_05715) ybaN 1200647..1201024 (+) 378 WP_001188905.1 DUF454 family protein -
  NML25_RS05720 (NML25_05720) apt 1201177..1201728 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  NML25_RS05725 (NML25_05725) dnaX 1201857..1203788 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  NML25_RS05730 (NML25_05730) ybaB 1203841..1204170 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  NML25_RS05735 (NML25_05735) recR 1204170..1204775 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  NML25_RS05740 (NML25_05740) htpG 1204885..1206759 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  NML25_RS05745 (NML25_05745) adk 1206940..1207584 (+) 645 WP_001220233.1 adenylate kinase -
  NML25_RS05750 (NML25_05750) hemH 1207716..1208678 (+) 963 WP_001250117.1 ferrochelatase -
  NML25_RS05755 (NML25_05755) aes 1208675..1209634 (-) 960 WP_000764314.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=609235 NML25_RS05735 WP_001195025.1 1204170..1204775(+) (recR) [Escherichia coli strain EC21Z-144]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=609235 NML25_RS05735 WP_001195025.1 1204170..1204775(+) (recR) [Escherichia coli strain EC21Z-144]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACTGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443