Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   LCF45_RS20615 Genome accession   NZ_CP084035
Coordinates   4040799..4041593 (-) Length   264 a.a.
NCBI ID   WP_002015081.1    Uniprot ID   R8I3Q7
Organism   Bacillus sp. 41-22     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4035799..4046593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCF45_RS20580 (LCF45_20565) - 4036192..4036338 (+) 147 WP_001247671.1 YycC family protein -
  LCF45_RS20585 (LCF45_20570) - 4036579..4037142 (-) 564 WP_002167694.1 PRK06770 family protein -
  LCF45_RS20590 (LCF45_20575) - 4037440..4037538 (-) 99 Protein_4008 sporulation initiation factor Spo0A C-terminal domain-containing protein -
  LCF45_RS27080 - 4037777..4038051 (-) 275 Protein_4009 hypothetical protein -
  LCF45_RS20595 (LCF45_20580) - 4038092..4038697 (-) 606 WP_078203130.1 hypothetical protein -
  LCF45_RS20600 (LCF45_20585) - 4038681..4038836 (-) 156 WP_002129038.1 hypothetical protein -
  LCF45_RS20605 (LCF45_20590) - 4038873..4039445 (-) 573 WP_002138281.1 imm11 family protein -
  LCF45_RS20610 (LCF45_20595) - 4039523..4039987 (-) 465 Protein_4013 T7SS effector LXG polymorphic toxin -
  LCF45_RS20615 (LCF45_20600) spo0A 4040799..4041593 (-) 795 WP_002015081.1 sporulation transcription factor Spo0A Regulator
  LCF45_RS20620 (LCF45_20605) spoIVB 4041880..4043172 (-) 1293 WP_002129041.1 SpoIVB peptidase -
  LCF45_RS20625 (LCF45_20610) recN 4043292..4045031 (-) 1740 WP_002088564.1 DNA repair protein RecN Machinery gene
  LCF45_RS20630 (LCF45_20615) argR 4045302..4045751 (-) 450 WP_002015076.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29525.32 Da        Isoelectric Point: 7.1180

>NTDB_id=609178 LCF45_RS20615 WP_002015081.1 4040799..4041593(-) (spo0A) [Bacillus sp. 41-22]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGIAYNGQECLNLLKEKQPDILVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKESATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=609178 LCF45_RS20615 WP_002015081.1 4040799..4041593(-) (spo0A) [Bacillus sp. 41-22]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTGGTATCGATGCTAGAGAGTTATGTTGCTGCCCAAGA
TGATATGGAAGTTATCGGAATTGCTTACAATGGTCAAGAATGTTTAAACTTATTGAAAGAAAAGCAGCCTGATATACTCG
TTTTAGACATTATTATGCCACATTTAGATGGTCTAGCTGTGCTAGAGAAAATGCGACATATTGAAAGGTTAAGACAACCT
AGCGTTATTATGTTGACAGCATTCGGACAAGAAGATGTGACGAAAAAAGCGGTTGATTTAGGGGCATCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACAAGTCATATTCGTCAAGTTAGTGGTAAGGAAAGTGCTACTATTAAACGTCCAT
TACCATCTTTCCGATCAGCAACAACAATCGATGGAAAACCGAAAAACTTAGATGCGAGTATTACAAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGGTACATGTACTTACGAGAAGCAATCTCTATGGTGTACAATGATATCGAATTACT
AGGATCTATTACGAAAGTATTATATCCAGATATTGCAAAGAAATATAATACAACAGCAAGCCGTGTCGAGCGCGCAATCC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTTGGTTATACTGTATCCATGTCA
AAAGCAAAACCTACGAATTCTGAGTTCATCGCAATGGTTGCGGATAAGCTAAGACTTGAACATAAGGCTTCGTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8I3Q7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818