Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NML26_RS09475 Genome accession   NZ_CP101210
Coordinates   1983048..1984475 (-) Length   475 a.a.
NCBI ID   WP_029397760.1    Uniprot ID   -
Organism   Escherichia coli strain EC21Z-147     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1978048..1989475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NML26_RS09445 (NML26_09450) yeeZ 1978103..1978927 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  NML26_RS09450 (NML26_09455) yeeY 1978973..1979902 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  NML26_RS09455 (NML26_09460) yoeI 1980117..1980179 (+) 63 WP_010723108.1 membrane protein YoeI -
  NML26_RS09460 (NML26_09465) plaP 1980169..1981527 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NML26_RS09465 (NML26_09470) tsuA 1981706..1982764 (+) 1059 WP_029397759.1 thiosulfate utilization transporter TsuA/YeeE -
  NML26_RS09470 (NML26_09475) tsuB 1982778..1983005 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NML26_RS09475 (NML26_09480) sbcB 1983048..1984475 (-) 1428 WP_029397760.1 exodeoxyribonuclease I Machinery gene
  NML26_RS09480 (NML26_09485) dacD 1984684..1985850 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NML26_RS09485 (NML26_09490) sbmC 1985969..1986442 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  NML26_RS09490 (NML26_09495) yeeA 1986640..1987698 (+) 1059 WP_001200890.1 FUSC family protein -
  NML26_RS09495 (NML26_09500) tmaR 1987870..1988199 (+) 330 WP_000450409.1 DUF496 family protein -
  NML26_RS27455 - 1988300..1988482 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  NML26_RS09505 (NML26_09510) - 1988602..1988682 (+) 81 WP_023441679.1 hypothetical protein -
  NML26_RS09510 (NML26_09515) - 1988971..1989051 (-) 81 Protein_1866 hypothetical protein -
  NML26_RS09515 (NML26_09520) yeeW 1989097..1989291 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54456.76 Da        Isoelectric Point: 5.4720

>NTDB_id=609169 NML26_RS09475 WP_029397760.1 1983048..1984475(-) (sbcB) [Escherichia coli strain EC21Z-147]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPIKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=609169 NML26_RS09475 WP_029397760.1 1983048..1984475(-) (sbcB) [Escherichia coli strain EC21Z-147]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACAGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGATTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579