Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LCF45_RS07895 Genome accession   NZ_CP084035
Coordinates   1534596..1535198 (-) Length   200 a.a.
NCBI ID   WP_000155584.1    Uniprot ID   J8ATF7
Organism   Bacillus sp. 41-22     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1529596..1540198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCF45_RS07875 (LCF45_07865) dnaD 1529887..1530594 (+) 708 WP_000728546.1 DNA replication protein DnaD -
  LCF45_RS07880 (LCF45_07870) nth 1530610..1531257 (+) 648 WP_000933020.1 endonuclease III -
  LCF45_RS07885 (LCF45_07875) - 1531261..1531779 (+) 519 WP_002086586.1 YpoC family protein -
  LCF45_RS07890 (LCF45_07880) - 1531806..1534529 (-) 2724 WP_254841765.1 PBP1A family penicillin-binding protein -
  LCF45_RS07895 (LCF45_07885) recU 1534596..1535198 (-) 603 WP_000155584.1 Holliday junction resolvase RecU Machinery gene
  LCF45_RS07900 (LCF45_07890) - 1535302..1536327 (+) 1026 WP_078203020.1 DUF2515 domain-containing protein -
  LCF45_RS27030 - 1536671..1536817 (-) 147 WP_307838604.1 phage portal protein -
  LCF45_RS07905 (LCF45_07895) - 1536936..1537178 (+) 243 WP_002011865.1 hypothetical protein -
  LCF45_RS07910 (LCF45_07900) - 1537194..1537538 (+) 345 WP_002126482.1 YppE family protein -
  LCF45_RS07915 (LCF45_07905) - 1537564..1537755 (-) 192 WP_002030817.1 YppF family protein -
  LCF45_RS07920 (LCF45_07910) - 1537932..1538570 (+) 639 WP_002086577.1 YppG family protein -
  LCF45_RS07925 (LCF45_07915) - 1538726..1539163 (+) 438 WP_078206304.1 CotD family spore coat protein -
  LCF45_RS07930 (LCF45_07920) - 1539220..1539774 (+) 555 WP_002030808.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23361.62 Da        Isoelectric Point: 9.5601

>NTDB_id=609169 LCF45_RS07895 WP_000155584.1 1534596..1535198(-) (recU) [Bacillus sp. 41-22]
MTIRYPNGKRYDQASQPHKTPIKKHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=609169 LCF45_RS07895 WP_000155584.1 1534596..1535198(-) (recU) [Bacillus sp. 41-22]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACAAAACAAGAAATAGAAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8ATF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63

100

0.63