Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LCN94_RS05290 Genome accession   NZ_CP084034
Coordinates   1041568..1042932 (-) Length   454 a.a.
NCBI ID   WP_195410209.1    Uniprot ID   -
Organism   Ruminococcus sp. FMB-CY1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1036568..1047932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCN94_RS05270 (LCN94_05275) - 1036970..1037761 (-) 792 WP_252559756.1 ABC transporter permease -
  LCN94_RS05275 (LCN94_05280) - 1038136..1039179 (-) 1044 Protein_1021 ABC transporter ATP-binding protein -
  LCN94_RS05280 (LCN94_05285) - 1039738..1040739 (+) 1002 WP_252559755.1 tyrosine recombinase XerC -
  LCN94_RS05285 (LCN94_05290) - 1040873..1041571 (-) 699 WP_252559754.1 DUF6873 family GME fold protein -
  LCN94_RS05290 (LCN94_05295) radA 1041568..1042932 (-) 1365 WP_195410209.1 DNA repair protein RadA Machinery gene
  LCN94_RS05295 (LCN94_05300) - 1042945..1043649 (-) 705 WP_252559753.1 N-acetylmuramoyl-L-alanine amidase -
  LCN94_RS05300 (LCN94_05305) - 1043842..1044087 (+) 246 WP_249377373.1 FeoA family protein -
  LCN94_RS05305 (LCN94_05310) - 1044115..1046025 (+) 1911 WP_252559752.1 ferrous iron transporter B -
  LCN94_RS05310 (LCN94_05315) - 1046194..1047405 (-) 1212 WP_022234268.1 iron-containing alcohol dehydrogenase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49278.83 Da        Isoelectric Point: 6.6230

>NTDB_id=609142 LCN94_RS05290 WP_195410209.1 1041568..1042932(-) (radA) [Ruminococcus sp. FMB-CY1]
MAKIKSVYICSQCGYESPKWYGKCPTCGEWNTMEEEIKESVKAAPAVKRKVASAVSSPYSITEITTENEHRYDTGCGELN
RVLGGGIVKGSLILLGGDPGIGKSTVLLQICQYLGNSMKVLYVSGEESQRQLKLRANRLGVNSPNLFVMTETDVEVVCEQ
IRAEKPDIVMIDSIQTMNLTELSSSPGSVTQVRESTNCLMRTAKSLDIPMFVVGHVNKEGSIAGPKVLEHIVDTVLHFEG
DKQMSCRILRAVKNRYGSTNEIGVFEMTDTGLVEVPNPSVMLLSGRPKGVSGTCVTCTIEGSRPILAEVQGLATQSGYGN
ARRMATGFDYNRLSLLLAVLEKRAGYYFSNNDAYINIVGGLRIDEPAIDLAVAMALISSLKDVPIDENVVVFGEIGLAGE
IRAVSQAQLRVNEAVRLGFTKIILPYHNLKAVKCDGAELIGVKNIRQAFEAVSI

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=609142 LCN94_RS05290 WP_195410209.1 1041568..1042932(-) (radA) [Ruminococcus sp. FMB-CY1]
ATGGCAAAAATTAAAAGTGTATATATATGCTCGCAGTGCGGCTACGAATCACCGAAATGGTACGGAAAATGTCCGACCTG
CGGCGAATGGAACACAATGGAAGAAGAAATCAAAGAAAGCGTGAAAGCTGCGCCTGCCGTAAAAAGAAAGGTAGCTTCTG
CGGTTTCTTCTCCTTATTCAATTACGGAAATCACCACAGAAAACGAGCACCGCTACGATACGGGCTGCGGCGAACTTAAC
CGTGTGCTTGGCGGCGGCATTGTAAAGGGCAGTCTTATTTTGCTCGGAGGTGATCCGGGTATCGGCAAATCAACCGTGTT
ACTGCAAATCTGTCAATATCTCGGCAACTCAATGAAAGTGCTTTATGTGTCTGGCGAAGAATCGCAAAGACAGCTTAAGT
TAAGGGCAAACCGACTCGGTGTAAATTCTCCGAATCTTTTTGTAATGACCGAAACCGATGTAGAAGTAGTGTGCGAACAA
ATCCGTGCTGAAAAGCCCGATATAGTAATGATCGACTCAATTCAGACAATGAATCTTACAGAATTAAGCTCCTCACCGGG
CAGTGTAACGCAGGTCAGAGAATCGACAAACTGCCTTATGCGCACGGCAAAGTCGCTTGATATTCCAATGTTTGTGGTAG
GTCATGTAAACAAAGAGGGTTCCATTGCGGGTCCGAAAGTGCTTGAGCACATCGTTGATACCGTACTGCACTTTGAAGGT
GACAAGCAGATGTCATGCAGAATTTTAAGAGCAGTCAAAAACAGATACGGTTCTACAAACGAAATCGGCGTGTTTGAAAT
GACCGACACGGGACTTGTGGAAGTGCCCAATCCGTCTGTAATGTTGCTGTCGGGCAGACCGAAAGGCGTATCGGGTACTT
GCGTAACCTGTACAATTGAGGGTTCTCGTCCTATTCTTGCGGAAGTTCAGGGACTTGCAACGCAAAGCGGCTACGGCAAC
GCTCGAAGAATGGCAACGGGCTTTGACTACAACCGACTTTCGCTTTTGCTTGCCGTGCTTGAAAAAAGAGCGGGATATTA
TTTTTCAAACAATGACGCTTATATAAACATTGTCGGCGGTCTTAGAATTGACGAACCTGCCATTGACCTTGCGGTCGCAA
TGGCGCTTATCAGCAGTCTGAAAGATGTTCCGATTGACGAGAATGTTGTAGTGTTCGGCGAAATCGGTCTTGCCGGCGAA
ATCAGGGCGGTTTCTCAAGCTCAATTAAGAGTAAACGAGGCTGTAAGGCTTGGATTTACAAAAATCATTCTTCCGTATCA
CAATCTGAAAGCCGTAAAATGTGACGGTGCAGAGCTTATCGGAGTTAAAAATATAAGACAGGCCTTTGAGGCAGTCAGCA
TATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-220)

Subunit ChlI of Mg-chelatase (ChlI)

(343-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

55.165

100

0.553
  radA Streptococcus pneumoniae Rx1

50.552

99.78

0.504
  radA Streptococcus pneumoniae D39

50.552

99.78

0.504
  radA Streptococcus pneumoniae R6

50.552

99.78

0.504
  radA Streptococcus pneumoniae TIGR4

50.552

99.78

0.504
  radA Streptococcus mitis NCTC 12261

50.552

99.78

0.504
  radA Streptococcus mitis SK321

50.552

99.78

0.504