Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LAZ93_RS02545 Genome accession   NZ_CP084033
Coordinates   563752..564192 (+) Length   146 a.a.
NCBI ID   WP_167441022.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain EB4 G3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 558752..569192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAZ93_RS02520 (LAZ93_02520) - 559057..559404 (+) 348 WP_016819451.1 MTH1187 family thiamine-binding protein -
  LAZ93_RS02530 (LAZ93_02530) - 560127..561539 (+) 1413 WP_167441024.1 helix-turn-helix transcriptional regulator -
  LAZ93_RS02535 (LAZ93_02535) - 561728..561961 (+) 234 WP_167441023.1 hypothetical protein -
  LAZ93_RS25395 - 561984..563522 (-) 1539 WP_404303263.1 hypothetical protein -
  LAZ93_RS02545 (LAZ93_02545) nucA/comI 563752..564192 (+) 441 WP_167441022.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LAZ93_RS02550 (LAZ93_02550) - 564363..565622 (+) 1260 WP_153795111.1 kelch repeat-containing protein -
  LAZ93_RS02555 (LAZ93_02555) - 565961..567226 (+) 1266 WP_123797873.1 IS110 family transposase -
  LAZ93_RS02560 (LAZ93_02560) - 567872..568219 (-) 348 WP_019685981.1 helix-turn-helix domain-containing protein -
  LAZ93_RS02565 (LAZ93_02565) - 568380..569126 (-) 747 WP_031462735.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16263.20 Da        Isoelectric Point: 8.2532

>NTDB_id=609113 LAZ93_RS02545 WP_167441022.1 563752..564192(+) (nucA/comI) [Paenibacillus polymyxa strain EB4 G3]
MEVSYDKRNRKRINCFLLAAIFSVQGVYAEPTAINQHTAAGYTLEFPSSRYPETRAHIRDGIAAGHSAVCTIDRDGAEEN
RRESLKGYPTKKGYDRDEWPMAMCAEGGAGADIRYITPSDNRGAGSWVSHQLDKYADGTKVRFIVK

Nucleotide


Download         Length: 441 bp        

>NTDB_id=609113 LAZ93_RS02545 WP_167441022.1 563752..564192(+) (nucA/comI) [Paenibacillus polymyxa strain EB4 G3]
ATGGAGGTGTCGTATGATAAAAGGAATCGTAAGAGGATTAATTGTTTTTTACTAGCTGCTATTTTCTCGGTACAAGGTGT
TTATGCTGAACCGACAGCAATCAACCAACATACAGCAGCTGGGTATACGTTGGAGTTCCCAAGTTCACGCTACCCTGAAA
CCAGGGCGCATATTAGAGATGGAATAGCAGCTGGACATTCTGCTGTATGTACGATTGACCGTGATGGAGCTGAAGAAAAC
AGAAGGGAGTCGCTCAAAGGCTATCCGACTAAAAAAGGATATGATCGCGACGAGTGGCCAATGGCAATGTGTGCTGAAGG
TGGCGCAGGTGCTGATATCAGATACATAACCCCTAGTGATAACCGGGGAGCAGGATCATGGGTAAGTCATCAGTTAGATA
AGTATGCTGATGGAACAAAGGTAAGATTCATAGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(56-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.231

71.233

0.493