Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NML27_RS17925 Genome accession   NZ_CP101197
Coordinates   3723208..3723813 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain EC21Z-151     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3718208..3728813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NML27_RS17905 (NML27_17900) aes 3718349..3719308 (+) 960 WP_000764314.1 acetyl esterase -
  NML27_RS17910 (NML27_17905) hemH 3719305..3720267 (-) 963 WP_001250117.1 ferrochelatase -
  NML27_RS17915 (NML27_17910) adk 3720399..3721043 (-) 645 WP_001220233.1 adenylate kinase -
  NML27_RS17920 (NML27_17915) htpG 3721224..3723098 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  NML27_RS17925 (NML27_17920) recR 3723208..3723813 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  NML27_RS17930 (NML27_17925) ybaB 3723813..3724142 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  NML27_RS17935 (NML27_17930) dnaX 3724195..3726126 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  NML27_RS17940 (NML27_17935) apt 3726255..3726806 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  NML27_RS17945 (NML27_17940) ybaN 3726959..3727336 (-) 378 WP_001188905.1 DUF454 family protein -
  NML27_RS17950 (NML27_17945) priC 3727406..3727933 (+) 528 WP_001522038.1 primosomal replication protein N'' -
  NML27_RS17955 (NML27_17950) rsmS 3727947..3728111 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=609106 NML27_RS17925 WP_001195025.1 3723208..3723813(-) (recR) [Escherichia coli strain EC21Z-151]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=609106 NML27_RS17925 WP_001195025.1 3723208..3723813(-) (recR) [Escherichia coli strain EC21Z-151]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACTGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443