Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LCF41_RS02530 Genome accession   NZ_CP084032
Coordinates   543667..545049 (-) Length   460 a.a.
NCBI ID   WP_225086750.1    Uniprot ID   -
Organism   Pectobacterium colocasium strain LJ1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 538667..550049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCF41_RS02500 pepP 538826..540151 (-) 1326 WP_225088083.1 Xaa-Pro aminopeptidase -
  LCF41_RS02505 - 540238..540825 (-) 588 WP_225086747.1 YecA family protein -
  LCF41_RS02510 zapA 541018..541347 (+) 330 WP_012773157.1 cell division protein ZapA -
  LCF41_RS02520 - 541645..542286 (+) 642 WP_225086748.1 5-formyltetrahydrofolate cyclo-ligase -
  LCF41_RS02525 nadR 542283..543536 (-) 1254 WP_225086749.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  LCF41_RS02530 radA 543667..545049 (-) 1383 WP_225086750.1 DNA repair protein RadA Machinery gene
  LCF41_RS02535 serB 545067..546044 (-) 978 WP_225086751.1 phosphoserine phosphatase -
  LCF41_RS02540 - 546201..546884 (+) 684 WP_225086752.1 YtjB family periplasmic protein -
  LCF41_RS02545 - 546951..547874 (-) 924 WP_225086753.1 hypothetical protein -
  LCF41_RS02550 prfC 548166..549755 (+) 1590 WP_225086754.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49578.11 Da        Isoelectric Point: 7.4218

>NTDB_id=609086 LCF41_RS02530 WP_225086750.1 543667..545049(-) (radA) [Pectobacterium colocasium strain LJ1]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDQ
SMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=609086 LCF41_RS02530 WP_225086750.1 543667..545049(-) (radA) [Pectobacterium colocasium strain LJ1]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAGTGCGGGGCTGACTACCCGCGCTGGCAAGGGCAGTGCAGCGC
CTGTCATGCCTGGAACACCATTACCGAAGTTCGCCTGGCCTCGGCATCCGTATCACGTTCCGACCGTCTCACCGGCTATG
CGGGCGAGAGTGCTGGCGTCAGCCGGGTACAAAAACTTTCGGAAATCAGTCTTGAAGCCCTGCCCCGTTTTTCTACCGGT
TTTCAGGAATTTGACCGTGTTCTGGGCGGCGGTGTCGTTCCCGGCAGCGCGATTCTGATCGGCGGCAACCCCGGCGCGGG
TAAAAGTACCCTGCTGCTGCAAACGCTCTGCAAGCTGTCAGAGAACATGAAAACCCTGTACGTTACTGGGGAAGAATCCT
TGCAGCAGGTGGCGATGCGGGCACACCGCCTTAATCTGCCGACCCAGAATCTCAACATGCTGTCGGAAACCAGCATCGAA
CAGATTTGTCTGATCGCCGAGCAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCTCCCGGCAGCGTGGCGCAGGTGCGTGAAACCGCCGCCTATCTGACACGCTTCGCCAAAACGCGCGGCGTCG
CTATCGTGATGGTCGGCCACGTCACCAAAGATGGCTCGCTCGCCGGGCCGAAAGTATTGGAACACTGCATCGACTGTTCC
GTCTTGCTGGACGGCGATGCCGATTCCCGTTTCCGCACCCTGCGCAGCCATAAAAACCGTTTCGGTGCCGTTAACGAGCT
GGGCGTGTTCGCGATGACGGAACAAGGACTACGCGAGGTCAGCAATCCATCGGCGATTTTCCTCAGCCGCGGCGACGAAG
TGACGTCCGGTAGTTCCGTGATGGTGGTGTGGGAAGGCACGCGCCCGCTGCTGGTCGAAATTCAGGCGCTGGTGGATCAA
TCGATGATGTCCAACCCGCGTCGCGTGGCGGTCGGGCTGGAGCAAAACCGCTTAGCCATTCTGTTGGCAGTGCTGCATCG
CCACGGCGGCTTGCAGATGTCGGATCAGGATGTGTTTGTGAATGTCGTCGGCGGCGTCAAAGTCACCGAAACCAGTGCCG
ACCTGGCACTGCTGTTATCGCTCGTCTCCAGTTTCCGCGACCGTCCGCTGCCGCAGGATCTCGTCATCTTCGGTGAAGTC
GGTCTGGCGGGCGAAATTCGCCCAGTTCCCAGCGGACAAGAGCGGATCACCGAAGCCGCCAAGCACGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCTGCCAGTATGCAGGTGTTCGGCGTGAAAAAGCTGGCCGACGCGC
TGGCAATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.478

100

0.485
  radA Streptococcus mitis NCTC 12261

43.202

99.13

0.428
  radA Streptococcus mitis SK321

43.202

99.13

0.428
  radA Streptococcus pneumoniae Rx1

43.202

99.13

0.428
  radA Streptococcus pneumoniae D39

43.202

99.13

0.428
  radA Streptococcus pneumoniae R6

43.202

99.13

0.428
  radA Streptococcus pneumoniae TIGR4

43.202

99.13

0.428