Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NML27_RS09365 Genome accession   NZ_CP101197
Coordinates   1961369..1962796 (-) Length   475 a.a.
NCBI ID   WP_000980560.1    Uniprot ID   -
Organism   Escherichia coli strain EC21Z-151     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1956369..1967796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NML27_RS09335 (NML27_09330) yeeZ 1956424..1957248 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  NML27_RS09340 (NML27_09335) yeeY 1957294..1958223 (+) 930 WP_032180084.1 LysR substrate-binding domain-containing protein -
  NML27_RS09345 (NML27_09340) yoeI 1958438..1958500 (+) 63 WP_010723108.1 membrane protein YoeI -
  NML27_RS09350 (NML27_09345) plaP 1958490..1959848 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NML27_RS09355 (NML27_09350) tsuA 1960027..1961085 (+) 1059 WP_000492349.1 thiosulfate utilization transporter TsuA/YeeE -
  NML27_RS09360 (NML27_09355) tsuB 1961099..1961326 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NML27_RS09365 (NML27_09360) sbcB 1961369..1962796 (-) 1428 WP_000980560.1 exodeoxyribonuclease I Machinery gene
  NML27_RS09370 (NML27_09365) dacD 1963005..1964171 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NML27_RS09375 (NML27_09370) sbmC 1964290..1964763 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  NML27_RS09380 (NML27_09375) yeeA 1964961..1966019 (+) 1059 WP_001200888.1 FUSC family protein -
  NML27_RS09385 (NML27_09380) tmaR 1966191..1966520 (+) 330 WP_000450409.1 DUF496 family protein -
  NML27_RS26565 - 1966621..1966944 (-) 324 WP_269447326.1 EutP/PduV family microcompartment system protein -
  NML27_RS09395 (NML27_09390) - 1966923..1967003 (+) 81 WP_023441679.1 hypothetical protein -
  NML27_RS09400 (NML27_09395) - 1967292..1967372 (-) 81 Protein_1846 hypothetical protein -
  NML27_RS09405 (NML27_09400) yeeW 1967418..1967612 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54392.67 Da        Isoelectric Point: 5.3498

>NTDB_id=609086 NML27_RS09365 WP_000980560.1 1961369..1962796(-) (sbcB) [Escherichia coli strain EC21Z-151]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
ERLGIARQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDDNEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQLYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=609086 NML27_RS09365 WP_000980560.1 1961369..1962796(-) (sbcB) [Escherichia coli strain EC21Z-151]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCACCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGACGCT
GAGCGTTTAGGGATTGCTCGTCAACACTGCCTGGATAACCTGAAAGTGTTGCGCGAAAACCCGCAAGTACGCGACAAAGT
TGTGGCAATTTTTGCAGAAGCTGAACCGTTTACACCATCAGATAATGTAGATGCACAGCTTTATAATGGCTTTTTTAGCG
ACGCCGATCGTGCAGCAATGAAAATCGTGCTGGAGACTGAACCGCGTAATTTACCGGCTCTGGATATCACCTTTGTTGAT
AAGCGTATCGAGAAACTCCTGTTCAACTACCGCGCCCGCAACTTCCCCGGCACGTTAGATGACAACGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCTGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583