Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   M6G08_RS20675 Genome accession   NZ_CP101137
Coordinates   4610997..4613081 (-) Length   694 a.a.
NCBI ID   WP_272588640.1    Uniprot ID   -
Organism   Streptomyces sp. M92     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4605997..4618081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M6G08_RS20660 (M6G08_20660) opcA 4607118..4608053 (-) 936 WP_272588637.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  M6G08_RS20665 (M6G08_20665) zwf 4608050..4609828 (-) 1779 WP_272588638.1 glucose-6-phosphate dehydrogenase -
  M6G08_RS20670 (M6G08_20670) tal 4609825..4610970 (-) 1146 WP_272588639.1 transaldolase -
  M6G08_RS20675 (M6G08_20675) recP/tkt 4610997..4613081 (-) 2085 WP_272588640.1 transketolase Machinery gene
  M6G08_RS20680 (M6G08_20680) - 4613239..4614156 (+) 918 WP_272588641.1 AraC family transcriptional regulator -
  M6G08_RS20685 (M6G08_20685) - 4614235..4615632 (-) 1398 WP_272588642.1 glycoside hydrolase family 16 protein -
  M6G08_RS20690 (M6G08_20690) - 4615898..4618003 (-) 2106 WP_272588643.1 MMPL family transporter -

Sequence

Protein


Download         Length: 694 a.a.        Molecular weight: 74637.39 Da        Isoelectric Point: 5.2316

>NTDB_id=609029 M6G08_RS20675 WP_272588640.1 4610997..4613081(-) (recP/tkt) [Streptomyces sp. M92]
MSTHTVDSADRFEWTELDRRAVDTARVLAADAVQKVGNGHPGTAMALAPAAYTIFQKVMRHDPADPEWTGRDRFVLSPGH
TSLTLYTQLYLAGYELELDDLKAFRTHGSKTPGHPEYGHTAGVETTTGPLGQGVANAVGMAMAARYERGLFDPGAPDGES
PFDHTVWAIVSDGDLQEGVSAEASSLAGHQRLGNLVFLYDDNHISIEGDTATAFSEDVLKRYEAYGWHVQRVEPAANGDI
DVHALYAALTAAKAETGRPSIIAMRTIIAWPAPNARNTEASHGSALGEEEVAATKRVLGFDPEKSFEVADDVLAHTRRAL
DRGAEAHAAWEKRIATWRSDRPEHAALFDRVVAGRLPEGWEDTLPVFETGKAVATRAASGKVLQALGPVLPELWGGSADL
AGSNNTTIDKTSSFLPEGNPLPEADPYGRTVHFGIREFSMAAEMNGIALHGNTRIYGGTFLVFSDYMRNAVRMSALMQLP
VTYVWTHDSVGLGEDGPTHQPVEHLAALRAIPGLNVVRPADANETAIAWAEILKRHSTHPAPHGLALTRQGVPTYEPNQD
AARGGYVLAEASTGSPEVILIATGSEVQLAVAAREALEAEGTPTRVVSMPSVEWFEEQTREYRDSVLPPAVRARVAVEAG
IGLTWYRFVGDAGRIVSLEHFGASADAKTLFTEYGFTAEHVVAAARKSLAAARG

Nucleotide


Download         Length: 2085 bp        

>NTDB_id=609029 M6G08_RS20675 WP_272588640.1 4610997..4613081(-) (recP/tkt) [Streptomyces sp. M92]
ATGAGCACGCACACAGTGGACAGCGCGGACCGCTTCGAATGGACCGAACTCGACCGGCGTGCCGTCGACACCGCCCGTGT
TCTGGCGGCCGACGCGGTGCAGAAGGTCGGCAACGGCCACCCCGGCACGGCGATGGCCCTCGCTCCGGCCGCGTACACGA
TCTTTCAGAAGGTGATGCGGCACGATCCCGCCGACCCGGAGTGGACCGGCCGTGACCGCTTCGTCCTCTCCCCCGGCCAC
ACCTCGCTGACCCTCTACACCCAGCTCTACCTCGCCGGGTACGAGCTGGAGCTGGACGACCTGAAGGCCTTCCGCACGCA
CGGCTCGAAGACGCCCGGCCACCCCGAGTACGGGCACACGGCGGGCGTGGAGACGACGACCGGCCCGCTCGGCCAGGGCG
TCGCCAACGCGGTCGGCATGGCGATGGCCGCCCGTTACGAGCGCGGACTCTTCGACCCCGGGGCTCCGGACGGCGAGTCC
CCCTTCGACCACACCGTCTGGGCGATCGTCTCCGACGGCGACCTCCAGGAGGGCGTCTCCGCCGAGGCGTCGTCCCTCGC
CGGACACCAGAGGCTCGGCAACCTCGTCTTCCTCTACGACGACAACCACATCTCCATCGAGGGCGACACCGCGACCGCGT
TCTCGGAGGACGTGCTGAAGCGGTACGAGGCCTACGGCTGGCACGTGCAGCGCGTCGAGCCCGCCGCGAACGGCGACATC
GACGTGCACGCCCTGTACGCGGCCCTGACGGCGGCGAAGGCGGAGACCGGGCGCCCGTCCATCATCGCCATGCGCACGAT
CATCGCGTGGCCCGCCCCGAACGCGCGGAACACCGAGGCCTCCCACGGCTCCGCCCTCGGCGAGGAGGAGGTCGCCGCCA
CCAAGCGCGTCCTCGGCTTCGACCCCGAGAAGTCCTTCGAGGTCGCCGACGACGTCCTCGCCCACACCCGCCGTGCCCTG
GACCGGGGCGCCGAGGCGCACGCCGCCTGGGAGAAGCGGATCGCCACGTGGCGCAGCGACCGGCCCGAGCACGCCGCGCT
GTTCGACCGCGTGGTCGCGGGCCGGCTGCCCGAGGGCTGGGAGGACACCCTGCCGGTGTTCGAGACCGGCAAGGCGGTCG
CCACGCGTGCCGCGTCCGGCAAGGTGCTCCAGGCGCTCGGTCCGGTACTGCCGGAGCTGTGGGGCGGCTCGGCCGACCTG
GCCGGGTCGAACAACACGACGATCGACAAGACGTCCTCCTTCCTCCCCGAGGGCAACCCGCTGCCGGAGGCAGACCCGTA
CGGCCGCACCGTGCACTTCGGCATCCGCGAGTTCTCGATGGCGGCGGAGATGAACGGCATCGCCCTGCACGGCAACACCC
GGATCTACGGCGGCACCTTCCTGGTCTTCTCCGACTACATGCGCAACGCCGTACGCATGTCGGCGCTGATGCAGCTCCCG
GTGACGTACGTCTGGACACACGACTCCGTCGGCCTGGGCGAGGACGGCCCGACCCACCAGCCGGTCGAGCACCTGGCCGC
CCTGCGGGCCATTCCGGGCCTGAACGTGGTCCGCCCGGCCGACGCCAACGAGACCGCGATCGCCTGGGCCGAGATCCTCA
AGCGGCACTCCACCCACCCGGCCCCGCACGGTCTGGCCCTCACCCGGCAGGGCGTGCCGACGTACGAGCCGAACCAGGAC
GCTGCGCGTGGCGGCTACGTCCTCGCCGAAGCCTCCACGGGCAGCCCGGAGGTGATCCTGATCGCCACCGGTTCCGAGGT
CCAGCTCGCCGTGGCCGCGCGGGAGGCGCTGGAGGCCGAGGGCACGCCCACGCGGGTGGTGTCGATGCCGTCCGTGGAGT
GGTTCGAGGAGCAGACCCGCGAGTACCGCGACAGCGTGCTGCCGCCCGCCGTGCGGGCCCGGGTGGCCGTGGAGGCCGGG
ATCGGCCTGACCTGGTACCGCTTCGTGGGCGACGCCGGCCGCATCGTCTCGCTGGAGCACTTCGGCGCCTCCGCCGACGC
CAAGACCCTGTTCACCGAGTACGGCTTCACCGCCGAGCACGTGGTCGCCGCCGCCAGAAAGTCCCTGGCCGCCGCCCGCG
GCTGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(18-357)

Transketolase, pyrimidine binding domain (Transket_pyr)

(372-550)

Transketolase, C-terminal domain (Transketolase_C)

(574-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

45.778

97.262

0.445