Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   M6G08_RS03300 Genome accession   NZ_CP101137
Coordinates   720708..722636 (+) Length   642 a.a.
NCBI ID   WP_272585682.1    Uniprot ID   -
Organism   Streptomyces sp. M92     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 715708..727636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M6G08_RS03265 (M6G08_03275) - 716262..716405 (+) 144 WP_198941288.1 hypothetical protein -
  M6G08_RS03285 (M6G08_03295) - 717024..717323 (+) 300 WP_272585679.1 YtxH domain-containing protein -
  M6G08_RS03290 (M6G08_03300) - 717379..718833 (+) 1455 WP_272585680.1 FGGY family carbohydrate kinase -
  M6G08_RS03295 (M6G08_03305) rcrP 718975..720708 (+) 1734 WP_272585681.1 ABC transporter ATP-binding protein Regulator
  M6G08_RS03300 (M6G08_03310) rcrQ 720708..722636 (+) 1929 WP_272585682.1 ABC transporter ATP-binding protein Regulator
  M6G08_RS03305 (M6G08_03315) - 722671..722907 (+) 237 WP_272585683.1 hypothetical protein -
  M6G08_RS03310 (M6G08_03320) - 722943..724202 (-) 1260 WP_272585684.1 RNA polymerase sigma factor -
  M6G08_RS03315 (M6G08_03325) dnaG 724297..726240 (-) 1944 WP_272585685.1 DNA primase -
  M6G08_RS03320 (M6G08_03330) - 726270..727535 (-) 1266 WP_272585687.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69488.88 Da        Isoelectric Point: 5.9578

>NTDB_id=608980 M6G08_RS03300 WP_272585682.1 720708..722636(+) (rcrQ) [Streptomyces sp. M92]
MAGPAGRMMAGGGPDQRSMDFKGSGKRLIAQFRPERATLFTLLACVVVSVGLSVVGPKILGRATDLVFAGIVGRDMPSGP
TKEQVLESMRERGEGNVADMLRSTDFTPGQGIDFGAVGEVLLLALAVFGAAGLLMAVATRLVNRAVNRTMFRLREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIQQTLQQSMGQLINSLLTIIGVLAMMFYVSWILALVALVTVPLSFVVATRVGK
RSQPQFVRQWRSTGALNAHIEEMYTGHTLVKVFGRQEESAKQFAEQNEALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDAEEQSADPIPGVRPEDLRGRVELE
HVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIAKMSRDELRSGIGMVLQDT
WLFGGTIAENIAYGASRKVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADVILVMENGSIIEQGTHGELLAAGGGYARLYAAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=608980 M6G08_RS03300 WP_272585682.1 720708..722636(+) (rcrQ) [Streptomyces sp. M92]
ATGGCGGGGCCTGCGGGTCGCATGATGGCCGGGGGCGGCCCCGACCAGCGTTCGATGGACTTCAAGGGGTCGGGCAAGCG
GCTGATCGCCCAGTTCCGGCCGGAGCGGGCGACCCTGTTCACGCTGCTGGCGTGCGTGGTCGTCAGCGTCGGCCTCAGCG
TGGTCGGGCCGAAGATCCTCGGCCGGGCCACCGACCTGGTCTTCGCCGGCATCGTCGGGCGGGACATGCCGTCCGGGCCC
ACGAAGGAACAGGTCCTGGAGTCGATGCGGGAGCGCGGTGAGGGCAACGTCGCCGACATGCTCCGCTCCACGGACTTCAC
GCCGGGCCAGGGCATCGACTTCGGCGCGGTGGGCGAGGTGCTGCTGCTGGCGCTGGCGGTGTTCGGCGCGGCGGGGCTGC
TGATGGCGGTGGCGACGCGGCTGGTGAACCGGGCGGTGAACCGCACCATGTTCCGGCTGCGCGAGGACGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGGGGCGAGGTGCTGAGCCGGGCGACGAACGACATCGACAA
CATCCAGCAGACGCTGCAGCAGTCGATGGGGCAGCTCATCAACTCGCTGCTGACGATCATCGGCGTGCTGGCGATGATGT
TCTACGTCTCCTGGATCCTGGCCCTGGTGGCGCTGGTGACGGTGCCGCTGTCGTTCGTGGTGGCCACGCGGGTGGGCAAG
CGGTCGCAGCCGCAGTTCGTGCGGCAGTGGCGCTCGACGGGCGCGCTGAACGCGCACATCGAGGAGATGTACACCGGGCA
CACGCTGGTGAAGGTGTTCGGGCGCCAGGAGGAGTCGGCGAAGCAGTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCCAACCTGAACTACGTGCTGGTCGCG
GTGGTGGGCGGACTGCGGGTGGCCTCGGGTTCCCTCTCCATCGGTGACGTGCAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTGGCGTCGGCGGAGCGGGTCTTCGAGC
TGCTGGACGCCGAGGAGCAGTCGGCGGACCCGATCCCGGGTGTGCGGCCGGAGGATCTGCGCGGGCGGGTGGAGCTGGAG
CACGTGTCGTTCCGCTACGACCCCGAGAAGCCGCTGATCGAGGACCTGTCGCTGAAGGTGGAGCCGGGTCACACGGTCGC
CATCGTCGGCCCCACTGGCGCCGGCAAGACCACCCTGGTCAACCTGCTGATGCGGTTCTACGAGGTCTCCGGCGGCCGGA
TCACCCTGGACGGCGTGGACATCGCCAAGATGTCCCGGGACGAGCTGCGCTCCGGCATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGGACCATCGCGGAGAACATCGCGTACGGGGCGTCGCGGAAGGTGACGCGCGGGGAGATCGAGGAGGC
GGCGCGGGCCGCGCACGCCGACCGGTTCGTGCGGACGCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGCACGG
GGGTGAGCGCGGGCGAGAAGCAGCTGATCACGATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTGGACGAG
GCGACGAGTTCCGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCAAGCTGGCGCACGGGCGGACGTCCTT
CGTCATCGCGCACCGGCTGTCGACGATCCGCGACGCCGACGTGATCTTGGTGATGGAGAATGGGTCCATCATCGAGCAGG
GCACGCACGGCGAACTGCTGGCGGCCGGCGGCGGGTACGCGCGCCTGTACGCGGCGCAGTTCGCGCAGGCGGTCGCCGAG
GTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.424

96.262

0.399