Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   M6G08_RS03295 Genome accession   NZ_CP101137
Coordinates   718975..720708 (+) Length   577 a.a.
NCBI ID   WP_272585681.1    Uniprot ID   -
Organism   Streptomyces sp. M92     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 713975..725708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M6G08_RS03260 (M6G08_03270) - 715516..716184 (+) 669 WP_272585678.1 ANTAR domain-containing protein -
  M6G08_RS03265 (M6G08_03275) - 716262..716405 (+) 144 WP_198941288.1 hypothetical protein -
  M6G08_RS03285 (M6G08_03295) - 717024..717323 (+) 300 WP_272585679.1 YtxH domain-containing protein -
  M6G08_RS03290 (M6G08_03300) - 717379..718833 (+) 1455 WP_272585680.1 FGGY family carbohydrate kinase -
  M6G08_RS03295 (M6G08_03305) rcrP 718975..720708 (+) 1734 WP_272585681.1 ABC transporter ATP-binding protein Regulator
  M6G08_RS03300 (M6G08_03310) rcrQ 720708..722636 (+) 1929 WP_272585682.1 ABC transporter ATP-binding protein Regulator
  M6G08_RS03305 (M6G08_03315) - 722671..722907 (+) 237 WP_272585683.1 hypothetical protein -
  M6G08_RS03310 (M6G08_03320) - 722943..724202 (-) 1260 WP_272585684.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62460.54 Da        Isoelectric Point: 6.2764

>NTDB_id=608979 M6G08_RS03295 WP_272585681.1 718975..720708(+) (rcrP) [Streptomyces sp. M92]
MLIRLLRAYLRPYRKPITLLVALQFVQTCASLYLPTLNADIIDNGVVKGDTGYILGYGALMIAISLVQVVGNVGAVYFGA
RTAAALGRDVRGAVFDRVQSFSAREVGGFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVMALGLDVPLSGV
LVGVVPVLAVCVTLIVRRLRPLFRAMQERLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRKANADLTEVSLGTGNLLAL
MFPVVMTVVNLSSIAVVWFGAHRIESGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLGTRSSVVP
PSAPVTELRRHGHLEVRGAGFRFPGAEEPVLRNIGLVARPGETTAVIGSTGSGKSTLLSLVPRLVDATEGEVLVDGVDVR
TLDPKVLARVVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAREFVSALDGGLDAPVSQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAELGRETAEATVVIVAQRVATIRDADRIIVLDEGRVVGEGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=608979 M6G08_RS03295 WP_272585681.1 718975..720708(+) (rcrP) [Streptomyces sp. M92]
GTGCTCATACGACTCCTGCGGGCCTATCTGCGGCCCTACCGGAAACCCATCACCCTGCTGGTGGCGCTGCAGTTCGTGCA
GACCTGCGCCAGCCTCTACCTGCCGACGCTGAACGCGGACATCATCGACAACGGCGTCGTCAAGGGCGACACCGGCTACA
TCCTGGGCTACGGCGCCCTCATGATCGCCATCTCGCTGGTGCAGGTGGTCGGCAACGTCGGTGCCGTCTACTTCGGTGCC
CGCACCGCCGCCGCGCTCGGCCGGGACGTGCGCGGTGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCCCGCGAGGTCGG
CGGCTTCGGCGCGCCCTCGCTGATCACCCGGACCACCAACGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACCTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGATGGCCCTCGGTCTGGACGTGCCGCTGTCCGGGGTG
CTGGTCGGGGTCGTGCCGGTGCTGGCGGTCTGCGTCACGCTGATCGTGCGCAGGCTGCGCCCGCTGTTCCGGGCGATGCA
GGAGCGCCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGGGCCTTCGTGCGCGACG
AGTACGAGCAGCAGCGGTTCCGGAAGGCCAACGCCGACCTCACCGAGGTGTCCCTCGGCACGGGCAACCTGCTGGCGCTG
ATGTTCCCGGTGGTCATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCGCACCGGATCGAGAGCGG
CGGGATGCAGATCGGCGACCTCACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTGCTGGGCACCCGAAGCAGTGTGGTCCCG
CCGTCGGCGCCGGTCACCGAGCTGCGGCGGCACGGGCACCTGGAGGTCCGGGGGGCCGGTTTCCGCTTCCCGGGGGCCGA
GGAGCCGGTGCTCAGGAACATCGGGCTGGTGGCGCGGCCGGGCGAGACGACCGCCGTCATCGGCTCGACCGGCAGCGGCA
AGTCCACCCTGCTCAGCCTGGTCCCGCGGCTGGTCGACGCCACGGAGGGCGAGGTGCTGGTCGACGGGGTGGACGTACGG
ACCCTCGATCCGAAGGTGCTGGCCAGGGTCGTGGGACTGGTGCCGCAGAAGCCGTACCTCTTCGCGGGGACGGTCGCGAC
CAACCTGCGGTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAGGGAGTTCG
TCTCCGCGCTGGACGGCGGGCTGGACGCGCCGGTCTCCCAGGGCGGCACCAACGTGTCGGGCGGTCAGCGGCAGCGGCTC
GCCATCGCCCGCACGCTGGTGCAGCGACCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCGACCGA
CGCGGCGCTGCGGGCCGAGCTGGGCCGGGAGACGGCCGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGGCGACCATCA
GGGACGCGGACCGGATCATCGTGCTGGACGAGGGGCGGGTGGTCGGCGAGGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.107

97.054

0.38