Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   M6G08_RS00760 Genome accession   NZ_CP101137
Coordinates   152707..154794 (+) Length   695 a.a.
NCBI ID   WP_272585244.1    Uniprot ID   -
Organism   Streptomyces sp. M92     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 147707..159794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M6G08_RS00735 (M6G08_00740) - 147881..148654 (+) 774 WP_272585240.1 ABC transporter permease -
  M6G08_RS00740 (M6G08_00745) - 148710..149717 (+) 1008 WP_272585241.1 COX15/CtaA family protein -
  M6G08_RS00745 (M6G08_00750) - 149704..150861 (-) 1158 WP_272585242.1 amidohydrolase family protein -
  M6G08_RS00750 (M6G08_00755) - 150944..151291 (-) 348 WP_272585243.1 hypothetical protein -
  M6G08_RS00755 (M6G08_00760) - 151378..152331 (-) 954 WP_272591215.1 heme o synthase -
  M6G08_RS00760 (M6G08_00765) recP/tkt 152707..154794 (+) 2088 WP_272585244.1 transketolase Machinery gene
  M6G08_RS00765 (M6G08_00770) tal 154829..155947 (+) 1119 WP_272585245.1 transaldolase -
  M6G08_RS00770 (M6G08_00775) zwf 155950..157473 (+) 1524 WP_272585246.1 glucose-6-phosphate dehydrogenase -
  M6G08_RS00775 (M6G08_00780) opcA 157470..158534 (+) 1065 WP_272585247.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  M6G08_RS00780 (M6G08_00785) pgl 158531..159313 (+) 783 WP_272585248.1 6-phosphogluconolactonase -

Sequence

Protein


Download         Length: 695 a.a.        Molecular weight: 75072.87 Da        Isoelectric Point: 4.9643

>NTDB_id=608973 M6G08_RS00760 WP_272585244.1 152707..154794(+) (recP/tkt) [Streptomyces sp. M92]
MSTKPTTTDLEWTELDQRAVDTARVLAADAVQKVGNGHPGTAMSLAPAAYTLFQKVMRHDPADADWVGRDRFVLSAGHSS
LTLYTQLYLAGFGLELDDLKSFRTWGSKTPGHPEYGHTTGVETTTGPLGQGVANAVGMAMAARYERGLFDPEAPEGESPF
DHFVYCIAGDGCLQEGISAEASSMAGHQKLGNLVLLWDDNHISIEGDTETAVSEDTCKRYEAYGWHVQRVAPKPDGDLDP
NAIYDAIEAAKKVTDRPSFIAMRSIIAWPAPNAQNTEAAHGSALGDDEVAATKRVMGFDPEQSFEVSDEVIGHTRKALEK
GQAARAVWEKAYQQWRDNNPERAAEYDRVAKGELPKGWEEKIPVFEAGKGVATRAASGKVLQALGAVIPELWGGSADLAG
SNNTTIDKTSSFLPAGNPLPEADPYGRTIHFGIREHAMAAEMNGIALHGNTRIYGGTFLVFSDYMRNAVRLSALMHLPVT
YVWTHDSIGLGEDGPTHQPVEHLASLRAIPGLNVVRPADANETAIAWREILRRWTKEFGKGQPHGLALTRQGVPTYEPND
DAAKGGYVLFEAEGGEPQVVLIATGSEVHVAVEAREALQADGVPTRVVSMPSVEWFEQQDQGYRDSVLPPSVKARVAVEA
GIGLTWHKYVGDAGRIVSLEHFGASADGKVLFQEFGFTAENVAAQARESIAAAQR

Nucleotide


Download         Length: 2088 bp        

>NTDB_id=608973 M6G08_RS00760 WP_272585244.1 152707..154794(+) (recP/tkt) [Streptomyces sp. M92]
GTGAGCACCAAGCCGACCACCACAGACCTCGAGTGGACCGAACTGGACCAGCGGGCCGTGGACACCGCCCGCGTCCTGGC
CGCCGATGCCGTACAGAAGGTTGGCAACGGCCATCCGGGTACGGCGATGAGCCTGGCGCCCGCCGCCTACACCCTCTTCC
AGAAGGTGATGCGGCACGACCCCGCCGACGCGGACTGGGTCGGGCGCGACCGTTTCGTGCTGTCCGCCGGCCACTCGTCC
CTGACCCTCTACACCCAGCTGTACCTGGCCGGCTTCGGCCTGGAGCTGGACGACCTGAAGTCCTTCAGGACGTGGGGCTC
GAAGACCCCCGGCCACCCGGAGTACGGGCACACCACCGGCGTGGAGACCACGACCGGTCCGCTGGGCCAGGGTGTCGCCA
ACGCGGTGGGCATGGCGATGGCCGCCCGCTACGAGCGTGGTCTGTTCGACCCGGAGGCTCCCGAGGGCGAGTCGCCGTTC
GACCACTTCGTCTACTGCATCGCCGGTGACGGCTGCCTCCAGGAGGGCATCTCCGCCGAGGCGTCCTCGATGGCGGGCCA
CCAGAAGCTGGGCAACCTGGTCCTGCTGTGGGACGACAACCACATCTCGATCGAGGGCGACACCGAGACCGCCGTCTCCG
AGGACACCTGCAAGCGGTACGAGGCCTACGGCTGGCACGTGCAGCGCGTCGCCCCGAAGCCGGACGGCGACCTGGACCCG
AACGCGATCTACGACGCGATCGAGGCGGCGAAGAAGGTCACCGACCGCCCCTCCTTCATCGCGATGCGCTCGATCATCGC
CTGGCCCGCCCCGAACGCGCAGAACACCGAGGCCGCCCACGGCTCGGCGCTCGGCGACGACGAGGTCGCGGCGACCAAGC
GCGTCATGGGCTTCGACCCGGAGCAGAGCTTCGAGGTCTCCGACGAGGTCATCGGCCACACCCGCAAGGCCCTGGAGAAG
GGCCAGGCCGCCCGCGCGGTCTGGGAGAAGGCGTACCAGCAGTGGCGGGACAACAACCCCGAGCGCGCCGCGGAGTACGA
CCGCGTGGCCAAGGGCGAGCTGCCCAAGGGCTGGGAGGAGAAGATCCCGGTCTTCGAGGCGGGCAAGGGCGTCGCCACCC
GTGCCGCGTCCGGCAAGGTGCTCCAGGCGCTCGGCGCGGTGATCCCGGAGCTGTGGGGCGGCTCGGCCGACCTGGCCGGG
TCGAACAACACGACGATCGACAAGACGTCGTCCTTCCTCCCGGCGGGCAACCCGCTGCCGGAGGCCGACCCGTACGGCCG
CACCATCCACTTCGGCATCCGTGAGCACGCGATGGCCGCGGAGATGAACGGCATCGCGCTGCACGGGAACACCCGCATCT
ACGGCGGAACGTTCCTGGTCTTCTCCGACTACATGCGCAACGCCGTCCGCCTGTCGGCGCTGATGCACCTGCCGGTGACG
TACGTGTGGACGCACGACTCCATCGGCCTCGGTGAGGACGGCCCGACCCACCAGCCGGTCGAGCACCTGGCCTCGCTGCG
GGCCATCCCGGGCCTGAACGTGGTCCGCCCGGCCGACGCCAACGAGACGGCGATCGCCTGGCGCGAGATCCTGCGCCGCT
GGACGAAGGAGTTCGGCAAGGGCCAGCCGCACGGTCTGGCGCTGACCCGCCAGGGCGTGCCGACGTACGAGCCGAACGAC
GACGCGGCCAAGGGCGGCTACGTCCTGTTCGAGGCCGAGGGCGGCGAGCCGCAGGTCGTGCTGATCGCCACCGGCTCCGA
GGTGCACGTGGCCGTGGAGGCCCGCGAGGCGCTCCAGGCCGACGGTGTGCCGACGCGTGTGGTGTCGATGCCGTCCGTCG
AGTGGTTCGAGCAGCAGGACCAGGGGTACCGGGACAGCGTCCTGCCCCCGTCCGTGAAGGCTCGTGTCGCGGTCGAGGCC
GGGATCGGTCTGACCTGGCACAAGTACGTGGGGGACGCCGGCCGCATCGTTTCCCTGGAGCACTTCGGTGCTTCGGCCGA
CGGCAAGGTGCTCTTCCAGGAGTTCGGCTTCACTGCCGAGAACGTGGCCGCCCAGGCGCGGGAATCGATCGCCGCAGCCC
AGCGCTGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-533)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(16-355)

Transketolase, C-terminal domain (Transketolase_C)

(576-682)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

44.838

97.554

0.437