Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LCQ81_RS01710 Genome accession   NZ_CP084012
Coordinates   399643..401472 (-) Length   609 a.a.
NCBI ID   WP_011068648.1    Uniprot ID   -
Organism   Bifidobacterium longum strain NBRC 114370     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 394643..406472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCQ81_RS11610 - 394963..395340 (+) 378 WP_007052935.1 hypothetical protein -
  LCQ81_RS01685 (LCQ81_01685) rsmI 395367..396377 (-) 1011 WP_032746934.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LCQ81_RS01700 (LCQ81_01700) - 396957..398375 (-) 1419 WP_011068650.1 MFS transporter -
  LCQ81_RS01705 (LCQ81_01705) - 398457..399503 (+) 1047 WP_007052939.1 FAD:protein FMN transferase -
  LCQ81_RS01710 (LCQ81_01710) rcrQ 399643..401472 (-) 1830 WP_011068648.1 ABC transporter ATP-binding protein Regulator
  LCQ81_RS01715 (LCQ81_01715) rcrP 401686..403557 (-) 1872 WP_100970039.1 ABC transporter ATP-binding protein Regulator
  LCQ81_RS01720 (LCQ81_01720) - 403744..404265 (-) 522 WP_041473941.1 MarR family winged helix-turn-helix transcriptional regulator -
  LCQ81_RS01725 (LCQ81_01725) - 404602..404946 (-) 345 WP_174768606.1 hypothetical protein -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 66695.93 Da        Isoelectric Point: 5.6488

>NTDB_id=608952 LCQ81_RS01710 WP_011068648.1 399643..401472(-) (rcrQ) [Bifidobacterium longum strain NBRC 114370]
MPRGPMGGRRAVEEPHDFGKVMGKLVNYCRNYLPVIIIALILGAAGTVCQIVGPDKLKDMTNEIVKGLPAIVNGRPVMNS
VDFGTVGHIAWTLVALYVGYAVLGYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSVTLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMAIMKSSQKYFARQQMALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFEKYNSDLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALDGQIEFGVIVAFMMYVRLFTQPL
SQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESDKSALLGTNGHEVKGDVEFSHVQFGYEPGKPIINDFSASVSAGQKVA
IVGPTGAGKTTMVNLLMRFYEISGGSISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTNKQIEDAC
KAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSFVI
AHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=608952 LCQ81_RS01710 WP_011068648.1 399643..401472(-) (rcrQ) [Bifidobacterium longum strain NBRC 114370]
ATGCCAAGAGGACCAATGGGCGGCAGGCGTGCCGTCGAAGAGCCCCATGATTTCGGCAAAGTCATGGGCAAACTCGTGAA
CTACTGCCGCAACTATCTTCCCGTCATCATCATCGCGCTCATCCTGGGCGCGGCCGGCACCGTCTGCCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAAGGTCTGCCCGCCATCGTTAACGGCAGACCGGTGATGAACTCG
GTAGATTTCGGCACGGTGGGCCACATCGCCTGGACTTTGGTGGCCCTGTACGTGGGCTACGCCGTGCTCGGCTACGTGCA
AAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGACTGCGCGAGTCCATCTCGGTCAAAATCAACAAACTGC
CGCTCAAATACTTCGACAAGGTTAGCTACGGCGACGTGCTGTCGCGCATAACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGCCAGTCGCTCGGCTCGCTGATTACCTCGGTGACGCTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGCCATCATGAAGTCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGATGGCGCTGGGTGACGTCAACGGCCACGTGGAGGAGATGTACGCCGGTCACCTCATCGTCAAG
GCATACAACGGCGAGGCCGATTCGATTCGTCGCTTCGAGAAGTACAACTCGGACCTCTACGAGTCCGGCTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAATTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCGCTCGACGGGCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTATGTCCGCCTGTTCACTCAGCCGCTT
TCGCAGTTTGCGCAGGCCTTCCAGAACCTGCAGCGCTGCGCGGCCGCCGCCGAGCGCGTGTTCGGTTTCCTTGAAGAGCC
GGAGATGGAGGACGAATCCGACAAGTCCGCTTTGCTTGGGACCAACGGCCACGAAGTGAAGGGCGACGTGGAATTCAGCC
ACGTGCAGTTCGGCTACGAGCCGGGCAAGCCGATTATCAACGACTTCTCCGCTTCAGTCTCGGCCGGTCAGAAGGTCGCC
ATCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTCAACCTGCTGATGCGCTTCTACGAGATTTCCGGCGGTTCGAT
TTCGATTGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGCTGCAGGATACGT
GGGTGTTCCGTGGCACTGTGCGCGAGAACATCGCCTACTCCAAGCCTGGCGTGACCAACAAGCAAATCGAGGATGCGTGC
AAGGCCGTGGGCCTCGACCACTTCATCCGCTCGCTGCCGGACGGCTATGACACCGTGCTCGATGACAAGTCGTCGCTCTC
CCAGGGCCAGAAGCAGCTGCTGACCATCGCCCGCGCGATGGTGCAGGACGCGCCGATTCTGATTCTCGACGAGGCCACCT
CCTCGGTCGATACCCGCACCGAAGAGCTGATTCAGAAGGCCATGGATGCGCTGACCGTGGGGCGTACGAGCTTTGTGATC
GCGCATCGCCTCTCCACGATTCGCGACGCCGACATGATCCTCGTCATGAACCACGGCGACGTGATCGAGCGCGGCACGCA
TGATGAACTGCTGGCGGCGGGCGGTTTTTACGCCGACCTCTACAACAGCCAGTTCGCGCTTGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(387-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.017

96.059

0.519