Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LCR02_RS03505 Genome accession   NZ_CP084007
Coordinates   682007..683380 (-) Length   457 a.a.
NCBI ID   WP_138306999.1    Uniprot ID   -
Organism   Flavonifractor plautii strain NBRC 113805     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 677007..688380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCR02_RS03490 (LCR02_03490) - 678532..679065 (+) 534 WP_138307003.1 amidase domain-containing protein -
  LCR02_RS03495 (LCR02_03495) - 679273..680715 (+) 1443 WP_225123373.1 hypothetical protein -
  LCR02_RS03500 (LCR02_03500) - 680755..681783 (-) 1029 WP_024724088.1 tyrosine recombinase XerC -
  LCR02_RS03505 (LCR02_03505) radA 682007..683380 (-) 1374 WP_138306999.1 DNA repair protein RadA Machinery gene
  LCR02_RS03510 (LCR02_03510) - 683377..684129 (-) 753 WP_044940205.1 N-acetylmuramoyl-L-alanine amidase -
  LCR02_RS03515 (LCR02_03515) - 684257..684715 (+) 459 WP_225123374.1 YhcH/YjgK/YiaL family protein -
  LCR02_RS03520 (LCR02_03520) - 684902..685360 (+) 459 WP_009256860.1 spore coat protein CotJB -
  LCR02_RS03525 (LCR02_03525) - 685361..685957 (+) 597 WP_007488978.1 manganese catalase family protein -
  LCR02_RS03530 (LCR02_03530) - 686121..686822 (+) 702 WP_035300162.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49057.51 Da        Isoelectric Point: 5.8607

>NTDB_id=608905 LCR02_RS03505 WP_138306999.1 682007..683380(-) (radA) [Flavonifractor plautii strain NBRC 113805]
MKAKTLFYCTECGNETPKWSGQCPACRAWNTLVERPAEPKKRSAAAASVAGGGLRGTGNRPRPMREVETTHELRFETGMN
ELDRVLGGGAVKGSLVLVGGAPGIGKSTLMLQICDNLCRFASVLYVSGEESERQIKLRAERLHVRGEGMYLLAETNLEDV
LESVNELKPDVLIVDSIQTLYNGDLTTAPGSVGQVKDCTMALMQLAKGQGVTVFVIGHVNKEGSIAGPKVLEHMVDCVLY
FEGEQQNSYRILRAAKNRFGATNEIGVFEMEDSGLSEVPNPSEMLLSGRPQDTPGTCVTCVMEGVRPVLAEVQALLAPTS
FNVPRRTANGFDFNRANLLLAVLEKRGGLMVSSCDAYINVIGGLFLDEPAADLAMIVALASSFRDKPVPGDLAAIGEVGL
TGELRSVNALGQRLSEVRRLGFTKCLIPARTGGKLDTPDGLQLIPVRNIREALAALL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=608905 LCR02_RS03505 WP_138306999.1 682007..683380(-) (radA) [Flavonifractor plautii strain NBRC 113805]
ATGAAAGCAAAAACACTGTTTTATTGTACCGAGTGCGGAAATGAAACCCCAAAGTGGTCCGGCCAATGTCCCGCCTGCCG
GGCATGGAATACCCTTGTGGAGCGGCCGGCAGAGCCGAAAAAAAGGAGTGCGGCCGCCGCCTCTGTCGCTGGGGGCGGCC
TGCGGGGAACCGGCAACCGGCCCAGGCCCATGCGCGAGGTGGAAACCACCCACGAGCTCCGCTTTGAAACCGGGATGAAT
GAGCTGGACCGGGTGCTGGGCGGGGGAGCGGTGAAGGGCTCTCTGGTGCTGGTGGGGGGTGCCCCCGGCATCGGCAAGTC
CACCCTGATGCTCCAGATCTGCGACAACCTGTGCCGTTTTGCCTCTGTGCTCTATGTCTCCGGGGAGGAGTCGGAGCGGC
AGATCAAGCTGCGGGCGGAGCGGCTCCATGTCCGTGGAGAGGGAATGTACCTTCTGGCTGAGACCAACCTGGAGGATGTG
CTGGAGTCGGTCAACGAGCTGAAGCCAGACGTGCTAATTGTGGACTCCATCCAGACCCTCTACAACGGGGATCTGACCAC
CGCTCCCGGCAGCGTAGGACAGGTAAAGGACTGTACTATGGCGCTGATGCAGTTGGCGAAGGGGCAGGGGGTCACCGTCT
TTGTCATCGGACACGTCAATAAGGAGGGGTCTATCGCAGGCCCCAAGGTGCTGGAGCACATGGTGGACTGCGTGCTCTAT
TTCGAAGGTGAGCAGCAGAACTCCTACCGCATTCTGCGCGCGGCAAAGAACCGTTTCGGCGCCACCAATGAGATCGGCGT
CTTTGAGATGGAGGACTCCGGCCTGAGTGAAGTGCCCAATCCCTCGGAGATGCTGCTCTCGGGACGGCCTCAGGACACCC
CCGGCACCTGCGTCACCTGCGTCATGGAGGGGGTGCGGCCCGTTTTGGCCGAGGTGCAGGCCCTGCTGGCGCCCACCAGC
TTCAATGTGCCGCGCAGGACCGCCAACGGCTTCGACTTCAACCGGGCGAATCTGCTGTTGGCTGTTCTGGAAAAGCGGGG
TGGACTGATGGTCAGTTCCTGTGACGCCTATATTAACGTCATCGGCGGCTTGTTTTTGGACGAGCCCGCCGCCGACCTGG
CCATGATCGTCGCCCTGGCTTCCAGCTTCCGGGACAAGCCCGTGCCTGGAGATCTGGCCGCCATCGGCGAGGTTGGCCTG
ACCGGAGAGCTGCGCTCAGTCAATGCGTTGGGCCAGCGGCTGAGTGAGGTACGCCGTCTTGGGTTCACAAAGTGCCTGAT
CCCAGCCCGCACTGGCGGAAAGCTGGACACCCCGGATGGCCTGCAGCTCATTCCGGTCCGCAACATCCGTGAGGCGCTGG
CCGCGCTTTTGTAG

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(366-455)

AAA domain (AAA_25)

(72-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.954

100

0.53
  radA Streptococcus pneumoniae Rx1

49.781

99.781

0.497
  radA Streptococcus pneumoniae D39

49.781

99.781

0.497
  radA Streptococcus pneumoniae R6

49.781

99.781

0.497
  radA Streptococcus pneumoniae TIGR4

49.781

99.781

0.497
  radA Streptococcus mitis NCTC 12261

49.781

99.781

0.497
  radA Streptococcus mitis SK321

49.781

99.781

0.497