Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   FJ970_RS30525 Genome accession   NZ_CP083952
Coordinates   6245126..6245932 (-) Length   268 a.a.
NCBI ID   WP_140758886.1    Uniprot ID   -
Organism   Mesorhizobium sp. B2-1-8     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 6227351..6252514 6245126..6245932 within 0


Gene organization within MGE regions


Location: 6227351..6252514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FJ970_RS30440 (FJ970_30440) - 6227351..6228538 (+) 1188 WP_140758900.1 tyrosine-type recombinase/integrase -
  FJ970_RS30445 (FJ970_30445) - 6229077..6229454 (+) 378 WP_140758899.1 hypothetical protein -
  FJ970_RS30450 (FJ970_30450) - 6229844..6231646 (-) 1803 WP_140758898.1 SIR2 family protein -
  FJ970_RS30455 (FJ970_30455) - 6231735..6232592 (-) 858 WP_140758897.1 RES family NAD+ phosphorylase -
  FJ970_RS30460 (FJ970_30460) - 6232645..6233247 (-) 603 WP_140758896.1 hypothetical protein -
  FJ970_RS30465 (FJ970_30465) - 6233804..6234259 (-) 456 WP_140758895.1 MucR family transcriptional regulator -
  FJ970_RS30470 (FJ970_30470) - 6234600..6236864 (-) 2265 WP_227791976.1 hypothetical protein -
  FJ970_RS30475 (FJ970_30475) - 6237091..6237291 (-) 201 WP_140758893.1 hypothetical protein -
  FJ970_RS33745 - 6237367..6237501 (-) 135 WP_265336210.1 hypothetical protein -
  FJ970_RS30480 (FJ970_30480) - 6238510..6239463 (-) 954 WP_140758892.1 tetratricopeptide repeat protein -
  FJ970_RS30485 (FJ970_30485) - 6239667..6240458 (-) 792 WP_140758891.1 hypothetical protein -
  FJ970_RS30490 (FJ970_30490) - 6240473..6240772 (-) 300 WP_140758890.1 hypothetical protein -
  FJ970_RS30495 (FJ970_30495) - 6240857..6241048 (-) 192 WP_227791978.1 hypothetical protein -
  FJ970_RS30500 (FJ970_30500) - 6241294..6241443 (-) 150 Protein_6047 IS3 family transposase -
  FJ970_RS30505 (FJ970_30505) - 6241543..6241893 (+) 351 WP_140758889.1 transposase -
  FJ970_RS30510 (FJ970_30510) - 6241842..6242690 (+) 849 WP_140758888.1 IS3 family transposase -
  FJ970_RS30515 (FJ970_30515) - 6242886..6243074 (+) 189 WP_227791979.1 hypothetical protein -
  FJ970_RS30520 (FJ970_30520) - 6243086..6244894 (-) 1809 WP_140758887.1 hypothetical protein -
  FJ970_RS30525 (FJ970_30525) comEC 6245126..6245932 (-) 807 WP_140758886.1 ComEC/Rec2 family competence protein Machinery gene
  FJ970_RS30530 (FJ970_30530) - 6246053..6247129 (+) 1077 WP_140758885.1 ComEC/Rec2 family competence protein -
  FJ970_RS30535 (FJ970_30535) - 6247095..6247805 (-) 711 WP_140758884.1 hypothetical protein -
  FJ970_RS30540 (FJ970_30540) - 6247832..6248068 (-) 237 WP_140758883.1 hypothetical protein -
  FJ970_RS30545 (FJ970_30545) - 6248277..6248522 (-) 246 WP_227791981.1 hypothetical protein -
  FJ970_RS30550 (FJ970_30550) - 6248729..6248977 (-) 249 WP_140758881.1 conjugal transfer protein TraD -
  FJ970_RS30555 (FJ970_30555) - 6248979..6249305 (-) 327 WP_140758969.1 conjugal transfer protein TraD -
  FJ970_RS30560 (FJ970_30560) traA 6249479..6252514 (+) 3036 WP_140758880.1 Ti-type conjugative transfer relaxase TraA -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 30026.97 Da        Isoelectric Point: 5.3212

>NTDB_id=608808 FJ970_RS30525 WP_140758886.1 6245126..6245932(-) (comEC) [Mesorhizobium sp. B2-1-8]
MDLKIFDVEHGACALLTCDDNTRLMIDCGQNAATGWTPGGYLRRLGISYLDMLAITNYDEDHVDGLPDLRNSVDIGWLWR
NKKVSSQHIRYLKSEDGMGAGIDTLVDMIDFEFTGTASSTARPSFLGLKSTSFSNSPTIFGDENNLSMALHLSCYGIGVL
FPGDLEGPGWLRLLEDPSFRDALSKTQVLIASHHGRESGICEEVFEFCHPYFIAISDKGYMYDTQLTIPFYRSKALGAQF
RQAFRRVLTTRGDGRIGFRFSPTGWWPY

Nucleotide


Download         Length: 807 bp        

>NTDB_id=608808 FJ970_RS30525 WP_140758886.1 6245126..6245932(-) (comEC) [Mesorhizobium sp. B2-1-8]
ATGGATTTAAAGATCTTTGACGTGGAGCACGGTGCCTGTGCCCTGCTGACCTGTGATGACAATACCCGCCTTATGATCGA
TTGCGGGCAGAATGCCGCTACCGGGTGGACGCCTGGGGGCTATCTGCGGCGCCTCGGCATTAGCTACCTCGATATGCTTG
CGATTACCAACTATGACGAAGACCACGTTGACGGGCTTCCGGACCTACGCAACAGCGTGGATATCGGCTGGCTGTGGCGG
AACAAAAAGGTCTCCTCCCAACATATTCGTTACCTCAAATCCGAAGATGGGATGGGCGCTGGGATCGACACGCTAGTTGA
CATGATCGACTTCGAGTTTACAGGGACCGCCTCGTCAACTGCTCGCCCAAGTTTCCTGGGCCTGAAGAGCACGTCCTTTT
CAAATTCTCCGACGATATTTGGTGATGAAAACAATCTGAGCATGGCTTTGCATCTATCGTGTTACGGCATTGGTGTCTTG
TTCCCCGGCGACCTTGAAGGGCCGGGCTGGCTTCGGTTACTCGAAGACCCCTCATTTCGGGATGCTCTAAGCAAAACACA
GGTTCTGATTGCCTCTCACCATGGGAGAGAGAGTGGGATCTGCGAAGAAGTATTCGAATTCTGCCATCCTTACTTTATCG
CGATCTCCGACAAAGGTTACATGTACGATACTCAACTTACGATCCCATTCTATCGAAGCAAGGCCCTCGGCGCCCAGTTC
CGCCAAGCCTTTCGACGAGTGTTAACAACACGCGGCGATGGCCGCATTGGATTCCGGTTCTCTCCTACTGGGTGGTGGCC
CTACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Legionella pneumophila str. Paris

54.924

98.507

0.541