Detailed information NTG0608782

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NMD24_RS22085
• Genome accession: NZ_CP101014
• Coordinates: 4498667..4499692 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain ET5
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4493667..4504692

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMD24_RS22065 (NMD24_21915)	metJ	4494728..4495045 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
NMD24_RS22070 (NMD24_21920)	yiiX	4495229..4495837 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
NMD24_RS22075 (NMD24_21925)	rpmE	4495898..4496110 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
NMD24_RS22080 (NMD24_21930)	priA	4496313..4498511 (+)	2199	WP_001424430.1	primosomal protein N'	Machinery gene
NMD24_RS22085 (NMD24_21935)	cytR	4498667..4499692 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
NMD24_RS22090 (NMD24_21940)	ftsN	4499784..4500743 (+)	960	WP_000068828.1	cell division protein FtsN	-
NMD24_RS22095 (NMD24_21945)	hslV	4500836..4501366 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
NMD24_RS22100 (NMD24_21950)	hslU	4501376..4502707 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
NMD24_RS22105 (NMD24_21955)	menA	4502774..4503700 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NMD24_RS22110 (NMD24_21960)	rraA	4503793..4504278 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
NMD24_RS22115 (NMD24_21965)	zapB	4504363..4504608 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=608782 NMD24_RS22085 WP_000644904.1 4498667..4499692(+) (cytR) [Escherichia coli strain ET5]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=608782 NMD24_RS22085 WP_000644904.1 4498667..4499692(+) (cytR) [Escherichia coli strain ET5]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628