Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   LCH18_RS16205 Genome accession   NZ_CP083947
Coordinates   3348947..3350101 (+) Length   384 a.a.
NCBI ID   WP_224467731.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain CSUSB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3343947..3355101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH18_RS16190 (LCH18_16190) - 3345666..3347693 (-) 2028 WP_224467729.1 TonB-dependent copper receptor -
  LCH18_RS16195 (LCH18_16195) - 3347764..3348201 (-) 438 WP_148826925.1 DUF2946 family protein -
  LCH18_RS16200 (LCH18_16200) def 3348293..3348826 (-) 534 WP_004684452.1 peptide deformylase -
  LCH18_RS16205 (LCH18_16205) tsaP 3348947..3350101 (+) 1155 WP_224467731.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  LCH18_RS16210 (LCH18_16210) dprA 3350124..3351257 (+) 1134 WP_224467732.1 DNA-processing protein DprA Machinery gene
  LCH18_RS16215 (LCH18_16215) - 3351303..3351872 (+) 570 WP_183173775.1 L-threonylcarbamoyladenylate synthase -
  LCH18_RS16220 (LCH18_16220) - 3352272..3353192 (-) 921 WP_224467734.1 DMT family transporter -
  LCH18_RS16225 (LCH18_16225) - 3353530..3354084 (+) 555 WP_005401885.1 hypothetical protein -
  LCH18_RS16230 (LCH18_16230) - 3354208..3354753 (+) 546 WP_004984048.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42312.24 Da        Isoelectric Point: 7.4353

>NTDB_id=608779 LCH18_RS16205 WP_224467731.1 3348947..3350101(+) (tsaP) [Acinetobacter johnsonii strain CSUSB1]
MKKVFMGMPSFSALGFKQHMLALAVCVSVGAGVISTAQAAPTRNYNPPALKANAPNVYVVKKGDTLWDISKRFLNNPVRW
PEIWASNRHVKNPHWIFPGDRLLMCTHEGRPIIGKDEGDGCEGIIRRYTGGTKLQPQARVESLNNAIPVIPLEYIKNWLE
HSTILSEESLEGTPYIVGAADQRVIAGKGQTVYARGQGIEVGQRYAIYREGEPYIVTDAEGKKQNLGLELTQVGSAIAIR
GENDMSTLEITDSYNSEVRRGYRVLPEYDAMLPTLFYPTHAQDVTDGGQVIRVQGSIGLAAKHSVVTIDRGTVDGVQSGY
VFSVSQKGQEIRDPKTNEKLTLPTERIGNIMVFKTFDRVSYAYVLDSELPMNLGAKLSPSVVDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=608779 LCH18_RS16205 WP_224467731.1 3348947..3350101(+) (tsaP) [Acinetobacter johnsonii strain CSUSB1]
ATGAAAAAGGTTTTTATGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAGCAACACATGTTAGCACTTGCGGTTTGCGT
AAGTGTTGGCGCTGGCGTCATTTCAACAGCTCAAGCTGCACCTACACGAAATTACAATCCACCTGCTTTAAAAGCCAATG
CACCGAATGTTTATGTGGTGAAAAAAGGCGATACCCTGTGGGATATTTCTAAACGTTTCCTAAACAATCCTGTGCGCTGG
CCTGAAATTTGGGCCAGCAATAGACACGTCAAAAATCCGCATTGGATTTTTCCAGGTGACCGCTTACTGATGTGTACTCA
TGAAGGCCGTCCAATTATTGGTAAAGACGAAGGCGATGGCTGTGAAGGGATTATTCGTCGTTATACAGGCGGCACTAAAC
TTCAACCTCAAGCACGCGTTGAGTCTTTAAACAATGCCATTCCTGTCATTCCACTGGAATACATTAAAAACTGGCTTGAA
CACAGCACTATTCTTTCAGAGGAATCTCTAGAAGGTACACCATATATCGTTGGTGCTGCCGATCAGCGTGTGATTGCAGG
TAAAGGTCAAACCGTTTATGCACGTGGCCAAGGCATTGAAGTCGGTCAACGCTACGCGATTTACCGTGAAGGCGAACCGT
ACATTGTGACGGATGCAGAGGGCAAAAAACAAAATCTAGGTCTAGAATTGACTCAGGTTGGCTCAGCCATTGCCATTCGT
GGTGAAAATGACATGTCCACTTTAGAAATCACAGATTCGTATAATTCTGAAGTACGTCGTGGTTATCGCGTACTGCCTGA
ATACGACGCCATGCTTCCAACCTTGTTCTACCCAACACATGCACAAGATGTGACTGATGGTGGACAAGTGATTCGTGTTC
AAGGTTCGATTGGTCTAGCTGCGAAGCATTCAGTTGTAACCATTGATCGTGGCACAGTGGATGGCGTTCAATCGGGTTAT
GTGTTCTCGGTTAGTCAAAAGGGTCAAGAAATTCGTGATCCGAAAACCAATGAAAAACTGACCCTTCCAACGGAGCGTAT
CGGCAACATCATGGTATTTAAAACCTTTGACCGTGTCAGCTATGCTTATGTGCTCGACAGCGAACTACCAATGAACTTGG
GCGCGAAACTTTCTCCCTCTGTAGTGGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

66.234

100

0.664