Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LCH18_RS15815 Genome accession   NZ_CP083947
Coordinates   3262422..3262745 (-) Length   107 a.a.
NCBI ID   WP_410551829.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain CSUSB1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3257422..3267745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH18_RS15795 (LCH18_15795) - 3257459..3258202 (-) 744 WP_160361882.1 FHA domain-containing protein -
  LCH18_RS15800 (LCH18_15800) gspD 3258290..3260650 (-) 2361 WP_224467673.1 type II secretion system secretin GspD -
  LCH18_RS15805 (LCH18_15805) - 3260690..3261514 (-) 825 WP_159153591.1 type II secretion system protein N -
  LCH18_RS15810 (LCH18_15810) gspN 3261514..3262224 (-) 711 WP_148827120.1 type II secretion system protein N -
  LCH18_RS15815 (LCH18_15815) hns 3262422..3262745 (-) 324 WP_410551829.1 H-NS family nucleoid-associated regulatory protein Regulator
  LCH18_RS15820 (LCH18_15820) - 3262897..3263325 (-) 429 WP_159153593.1 acyl-CoA thioesterase -
  LCH18_RS15825 (LCH18_15825) - 3263333..3264526 (-) 1194 WP_224467677.1 heme biosynthesis protein HemY -
  LCH18_RS15830 (LCH18_15830) - 3264531..3265373 (-) 843 WP_224217047.1 hypothetical protein -
  LCH18_RS15835 (LCH18_15835) - 3265370..3266149 (-) 780 WP_168159848.1 uroporphyrinogen-III synthase -
  LCH18_RS15840 (LCH18_15840) hemC 3266162..3267082 (-) 921 WP_224467678.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12011.72 Da        Isoelectric Point: 9.5383

>NTDB_id=608774 LCH18_RS15815 WP_410551829.1 3262422..3262745(-) (hns) [Acinetobacter johnsonii strain CSUSB1]
MPDISNLSVEELKRLQVEAEALIASKKDQAIEDAYTQINAIAENVGLSIEQILEFGATKRKKGTRKSVEPRYRNKGNAAE
TWTGRGKQPRWLVAQLEKGAKLEDFLI

Nucleotide


Download         Length: 324 bp        

>NTDB_id=608774 LCH18_RS15815 WP_410551829.1 3262422..3262745(-) (hns) [Acinetobacter johnsonii strain CSUSB1]
ATGCCAGATATTAGTAATTTATCCGTAGAAGAGTTAAAGCGTCTACAAGTCGAAGCGGAAGCTTTAATTGCATCTAAAAA
AGATCAAGCAATTGAAGATGCTTATACCCAAATTAACGCGATTGCGGAAAATGTAGGCTTAAGCATTGAGCAAATTTTAG
AGTTTGGCGCGACTAAGCGTAAAAAAGGCACACGTAAGTCGGTTGAACCGCGTTACCGTAACAAAGGCAATGCTGCTGAG
ACATGGACTGGCCGTGGTAAGCAACCACGTTGGTTGGTGGCTCAGTTAGAAAAAGGTGCGAAGCTTGAAGATTTTTTAAT
CTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

86.792

99.065

0.86