Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   LCH18_RS15270 Genome accession   NZ_CP083947
Coordinates   3143240..3145462 (+) Length   740 a.a.
NCBI ID   WP_224467600.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain CSUSB1     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3138240..3150462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH18_RS15245 (LCH18_15245) lnt 3138668..3140227 (+) 1560 WP_125274167.1 apolipoprotein N-acyltransferase -
  LCH18_RS15250 (LCH18_15250) - 3140294..3140632 (-) 339 WP_148826843.1 tRNA-binding protein -
  LCH18_RS15255 (LCH18_15255) - 3140792..3141127 (-) 336 WP_224467599.1 hypothetical protein -
  LCH18_RS15260 (LCH18_15260) gspG 3141411..3141848 (-) 438 WP_010325797.1 type II secretion system major pseudopilin GspG -
  LCH18_RS15265 (LCH18_15265) gspF 3141882..3143087 (-) 1206 WP_058868820.1 type II secretion system inner membrane protein GspF -
  LCH18_RS15270 (LCH18_15270) priA 3143240..3145462 (+) 2223 WP_224467600.1 primosomal protein N' Machinery gene
  LCH18_RS15275 (LCH18_15275) - 3145545..3147386 (+) 1842 WP_224467602.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  LCH18_RS15280 (LCH18_15280) - 3147437..3148312 (+) 876 WP_062035131.1 Hsp33 family molecular chaperone HslO -
  LCH18_RS15285 (LCH18_15285) - 3148512..3148964 (+) 453 WP_062035133.1 DUF2147 domain-containing protein -
  LCH18_RS15290 (LCH18_15290) - 3149108..3150061 (+) 954 WP_224467604.1 DnaJ C-terminal domain-containing protein -
  LCH18_RS15295 (LCH18_15295) - 3150072..3150428 (+) 357 WP_004978810.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84179.07 Da        Isoelectric Point: 8.9695

>NTDB_id=608770 LCH18_RS15270 WP_224467600.1 3143240..3145462(+) (priA) [Acinetobacter johnsonii strain CSUSB1]
MPENTLSTTPSYRIRVAVPVYLYDCFDYSLTTEQYHQAEVGARVAVSFGRQNVVGVIVEKLTDEKPLDLGFKLKAITELL
DDNAILDAKVLSLLTWSAQYYQFPIGEVMHAALPSFLRQGKPYNLLARMWKLIDNHAEDKLKRSEKQQDAYKILKLHPTG
TSENILNLAGIETATLKALEKKQITQCILEAQDFKPQTMTLAQMPLTPNDEQKRAIQNILKARHSYHAFLLDGLTGSGKT
EVYLQVMQEVLKQGKQVLVLVPEIGLTPQTVSRFQSRFHCHIALLHSGLNDSKRLQAWQSAQTGKASIVIGTRSAIYTPL
PHLGLIVLDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSIDSYALVEQGKMTRLELDQRAGVAVMPKMHV
IDLKVAQKQNGISQQLIHEVQKRLDKKEQVLIFLNRRGYAPVLICESCGWQAKCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHSELKPIGLGTAKVEENLQALFPNFDVIRVDRDSTSRVGSWQKIYNKIQKSEPIILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIIQVAGRAGRGEKKGEVYLQTLRPDHPLLNTLLESGYRSFAKQTLKERKAAWM
PPYRYAALLRCESKDQELNQSFLQEHAQALRQASENSIDIWGPIPAPMERKAGRYQAHMVLLSKDRARMHFYIRQWWQTV
WHNKPHGMKLSLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=608770 LCH18_RS15270 WP_224467600.1 3143240..3145462(+) (priA) [Acinetobacter johnsonii strain CSUSB1]
ATGCCAGAAAATACACTTTCCACCACACCAAGCTACCGTATCCGCGTGGCTGTTCCCGTTTATCTATATGACTGTTTTGA
CTATAGTTTAACGACTGAACAATACCACCAAGCTGAAGTGGGTGCACGTGTGGCTGTCTCATTTGGTCGCCAAAATGTGG
TCGGTGTCATTGTTGAGAAACTCACCGATGAGAAACCACTCGATTTAGGCTTTAAACTTAAAGCCATAACTGAGTTGCTC
GATGACAACGCTATTCTAGATGCTAAAGTTTTAAGTTTATTGACATGGTCAGCGCAATATTACCAATTTCCCATTGGTGA
AGTGATGCATGCTGCTTTGCCCAGTTTTTTACGCCAAGGCAAACCTTATAATTTACTGGCGCGGATGTGGAAGCTGATCG
ATAATCATGCCGAAGACAAATTGAAGCGTTCTGAAAAACAACAAGATGCCTATAAAATTTTAAAGCTGCATCCCACAGGA
ACGTCTGAAAACATTTTAAATTTGGCTGGCATTGAAACTGCGACCTTAAAAGCCTTAGAAAAAAAGCAAATCACCCAGTG
CATACTTGAAGCCCAAGACTTTAAACCGCAAACCATGACACTGGCGCAAATGCCTCTCACGCCCAATGATGAACAAAAGC
GTGCCATTCAAAACATTCTCAAAGCTCGTCATAGCTACCATGCTTTCTTACTGGATGGTTTAACCGGTAGTGGCAAAACT
GAAGTCTATTTGCAAGTCATGCAAGAGGTTTTAAAACAAGGCAAACAAGTCTTGGTATTAGTGCCTGAAATTGGTCTCAC
CCCACAAACAGTGAGCCGTTTTCAGTCACGTTTTCACTGTCATATTGCGCTACTACATTCAGGTTTAAATGATTCTAAGC
GCCTGCAAGCCTGGCAAAGCGCACAAACGGGCAAAGCTTCGATTGTGATTGGCACACGTTCTGCCATCTATACCCCCCTT
CCGCATTTGGGTTTGATTGTCTTAGATGAAGAGCATGACTTATCTTTCAAGCAACAAGAGGGCTTCCGTTACCATGCTCG
TGATGTGGCTTTATACCGTGCACACTTAGAAAACTGTCCGATTATCCTCGGTTCTGCAACGCCAAGTATCGACAGTTATG
CTTTGGTCGAACAAGGTAAAATGACCCGTTTGGAGTTGGACCAACGTGCAGGTGTGGCCGTGATGCCTAAAATGCATGTG
ATCGATCTGAAAGTGGCACAAAAACAAAATGGCATTAGCCAACAGCTGATTCATGAAGTACAAAAGCGCTTAGACAAAAA
AGAACAGGTGCTGATTTTCTTAAACCGTCGCGGCTATGCGCCTGTGTTGATTTGTGAAAGTTGTGGCTGGCAGGCGAAGT
GCCCCCACTGCGATGCCAATTTTACCGTGCATCGACAGCCCTACCAGCATTTGCACTGTCACCACTGTGGCACCATCCAC
CGCATGCCTGAACACTGCCCGCAATGTCAGCATAGCGAACTGAAACCAATTGGTTTAGGCACCGCAAAAGTTGAAGAAAA
CCTACAAGCACTGTTCCCAAATTTTGACGTAATTCGGGTTGATCGTGACTCGACCAGTCGGGTCGGCAGCTGGCAAAAAA
TCTATAACAAGATTCAGAAAAGTGAACCCATCATTTTGCTCGGCACCCAAATGCTGGCCAAAGGGCATCACTTTCCTTAT
GTGACTTTAGTGGCGATTTTAGACATCGACTCAGGCCTACTCAGTGTTGACTTTCGTGCCACAGAACGTACTGCACAGCT
CATCATCCAAGTCGCTGGACGTGCTGGGCGTGGCGAGAAAAAAGGCGAAGTCTATTTACAAACTCTACGTCCAGACCATC
CTTTGCTGAATACCCTGCTGGAATCGGGCTATCGCAGCTTTGCCAAGCAAACGTTGAAAGAGCGTAAAGCTGCATGGATG
CCACCTTATCGCTATGCGGCTTTATTGCGCTGTGAATCCAAAGACCAAGAACTGAACCAAAGCTTTTTACAAGAGCATGC
ACAAGCACTGCGCCAAGCCTCCGAAAACAGTATTGATATTTGGGGACCGATTCCTGCGCCGATGGAGCGTAAAGCGGGCC
GCTATCAAGCACATATGGTGCTACTGTCCAAAGACCGTGCGCGTATGCATTTTTACATTCGTCAGTGGTGGCAAACTGTC
TGGCACAACAAACCGCATGGTATGAAATTGAGCCTTGATATTGATCCACAAGAGTTAAGTTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

DEAD/DEAH box helicase (DEAD)

(210-371)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.819

98.784

0.709