Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   LCH18_RS06890 Genome accession   NZ_CP083947
Coordinates   1447173..1447574 (+) Length   133 a.a.
NCBI ID   WP_224469070.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain CSUSB1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1442173..1452574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH18_RS06860 (LCH18_06860) kdsB 1442976..1443737 (+) 762 WP_224469066.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  LCH18_RS06865 (LCH18_06865) - 1443757..1444740 (+) 984 WP_224469068.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  LCH18_RS06870 (LCH18_06870) - 1444755..1445096 (+) 342 WP_010326854.1 PilZ domain-containing protein -
  LCH18_RS06875 (LCH18_06875) - 1445123..1445896 (+) 774 WP_195728026.1 TatD family hydrolase -
  LCH18_RS06880 (LCH18_06880) - 1445942..1446556 (+) 615 WP_004696845.1 TetR/AcrR family transcriptional regulator -
  LCH18_RS06885 (LCH18_06885) - 1446569..1447138 (+) 570 WP_078425023.1 type II secretion system protein -
  LCH18_RS06890 (LCH18_06890) xcpV 1447173..1447574 (+) 402 WP_224469070.1 type II secretion system minor pseudopilin GspI Machinery gene
  LCH18_RS06895 (LCH18_06895) xcpW 1447571..1448191 (+) 621 WP_224469071.1 type II secretion system minor pseudopilin GspJ Machinery gene
  LCH18_RS06900 (LCH18_06900) gspK 1448270..1449220 (+) 951 WP_224469073.1 type II secretion system minor pseudopilin GspK -
  LCH18_RS06905 (LCH18_06905) - 1449343..1449939 (+) 597 WP_004696854.1 6-pyruvoyl trahydropterin synthase family protein -
  LCH18_RS06910 (LCH18_06910) ung 1449981..1450694 (+) 714 WP_004696856.1 uracil-DNA glycosylase -
  LCH18_RS06915 (LCH18_06915) - 1450691..1451812 (+) 1122 WP_058951874.1 enoyl-CoA hydratase/isomerase family protein -
  LCH18_RS06920 (LCH18_06920) tadA 1451818..1452318 (+) 501 WP_005401161.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14641.74 Da        Isoelectric Point: 9.6943

>NTDB_id=608758 LCH18_RS06890 WP_224469070.1 1447173..1447574(+) (xcpV) [Acinetobacter johnsonii strain CSUSB1]
MKHYFINPRSGFTLLEVMVALAIFATAAVALTKVGMQYTQSTAHAILRTKAQFVALNEISMMEINRDWLQGTASKQITQQ
GETWQIDKSAQATISANVQRVNVQVSLVNPETGKVDSGVTSLVFFNHRDGSQP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=608758 LCH18_RS06890 WP_224469070.1 1447173..1447574(+) (xcpV) [Acinetobacter johnsonii strain CSUSB1]
ATGAAACATTATTTCATTAATCCTCGCTCAGGATTTACATTGCTGGAAGTGATGGTGGCACTGGCTATTTTTGCTACAGC
AGCGGTCGCTTTAACCAAAGTGGGTATGCAATATACTCAGTCTACAGCCCACGCTATCTTGCGTACCAAGGCACAATTTG
TTGCCTTGAATGAAATTTCGATGATGGAAATTAATCGGGATTGGTTACAAGGCACGGCCTCTAAACAAATCACCCAACAA
GGTGAAACTTGGCAAATTGATAAATCAGCGCAAGCAACGATTAGTGCTAATGTGCAACGCGTCAATGTACAGGTGAGCTT
GGTGAATCCTGAAACTGGAAAAGTAGATTCGGGTGTTACGAGTTTAGTTTTTTTTAACCATCGTGATGGAAGCCAACCAT
GA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(48-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

76.068

87.97

0.669