Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   LCH18_RS02080 Genome accession   NZ_CP083947
Coordinates   437865..438722 (+) Length   285 a.a.
NCBI ID   WP_004691238.1    Uniprot ID   A0AAW6JCY5
Organism   Acinetobacter johnsonii strain CSUSB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 432865..443722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH18_RS02055 (LCH18_02055) - 433479..433853 (-) 375 WP_224468235.1 hypothetical protein -
  LCH18_RS02060 (LCH18_02060) - 434065..435057 (-) 993 WP_224468237.1 sensor domain-containing diguanylate cyclase -
  LCH18_RS02065 (LCH18_02065) - 435394..435969 (-) 576 WP_004691243.1 xanthine phosphoribosyltransferase -
  LCH18_RS02070 (LCH18_02070) - 436060..436770 (-) 711 WP_224468238.1 DUF3108 domain-containing protein -
  LCH18_RS02075 (LCH18_02075) - 436926..437603 (-) 678 WP_224468240.1 hypothetical protein -
  LCH18_RS02080 (LCH18_02080) tonB2 437865..438722 (+) 858 WP_004691238.1 energy transducer TonB Machinery gene
  LCH18_RS02085 (LCH18_02085) - 438768..439178 (-) 411 WP_224468242.1 hypothetical protein -
  LCH18_RS02090 (LCH18_02090) ybeY 439280..439759 (-) 480 WP_004691232.1 rRNA maturation RNase YbeY -
  LCH18_RS02095 (LCH18_02095) - 439817..440893 (-) 1077 WP_178896346.1 PhoH family protein -
  LCH18_RS02100 (LCH18_02100) miaB 440932..442389 (-) 1458 WP_224468243.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32599.13 Da        Isoelectric Point: 6.6632

>NTDB_id=608751 LCH18_RS02080 WP_004691238.1 437865..438722(+) (tonB2) [Acinetobacter johnsonii strain CSUSB1]
MPLAHDWWKDPIFTATVVLAVFLHLVILTLQFAMPQENDAAVKEIAVTLRPSDKKIENADFLAQADQQGSGTFRESHRMS
SDMPAPMLEQSTGEQQRETLEQIQQKRELNFEEKLLMTTLSWQKQAEDNQRKKAMEEMNSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDISAAYLEKFRQKVEFYGNRYYPEAAKQQRLAGEVRLMVILNASGGIRAIRLIDSSGHEML
DEAAKASVRKAAPFGGFDAKMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 858 bp        

>NTDB_id=608751 LCH18_RS02080 WP_004691238.1 437865..438722(+) (tonB2) [Acinetobacter johnsonii strain CSUSB1]
ATGCCTTTGGCTCATGATTGGTGGAAAGACCCAATTTTTACAGCGACCGTTGTACTGGCGGTATTTTTGCATCTCGTGAT
TTTGACTTTGCAATTTGCGATGCCTCAAGAAAATGATGCGGCAGTGAAAGAAATTGCGGTTACTTTGCGTCCTTCTGATA
AAAAAATTGAAAATGCAGATTTTTTAGCGCAAGCCGATCAACAAGGTTCAGGGACCTTTCGTGAGTCACATCGTATGTCG
AGTGACATGCCCGCACCGATGCTTGAGCAAAGTACAGGCGAACAGCAGCGTGAAACTTTAGAGCAGATTCAACAAAAACG
TGAGCTGAATTTTGAAGAAAAGCTGTTAATGACGACCTTAAGTTGGCAAAAACAAGCTGAGGATAATCAGCGCAAAAAAG
CCATGGAAGAAATGAACAGTCAATTTCAAGCCAAAGCAGCAATGGTGGCCAGCCTTGAAGCGCAATATTTGCAACGCCAA
CAAAACTTTAGCCGTCAGCAAAAAATTAAAACAGTCGATGGTATTCAAGCCAAGCAAGATATTTCGGCCGCCTATCTTGA
AAAGTTCCGTCAGAAAGTGGAATTTTATGGCAACCGTTACTATCCAGAAGCAGCTAAACAGCAGCGGCTGGCGGGTGAAG
TGCGTTTAATGGTGATTCTAAATGCATCAGGAGGTATCCGCGCTATTCGTCTGATTGATAGTTCAGGCCATGAGATGCTT
GATGAGGCTGCAAAAGCGTCGGTGCGTAAAGCCGCACCATTTGGTGGATTTGATGCCAAAATGAAGGATATTTCTGAGTT
ACGCATTGTGCGTACATGGCGTTTTGACCCAGCAGAGGCAGAGTTTGAAGTGCACTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

74.286

98.246

0.73