Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   LCH16_RS18380 Genome accession   NZ_CP083943
Coordinates   3731969..3733114 (+) Length   381 a.a.
NCBI ID   WP_015418439.1    Uniprot ID   -
Organism   Bacillus velezensis strain CSUSB3     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3726969..3738114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH16_RS18360 (LCH16_18360) - 3727865..3728293 (-) 429 WP_224462882.1 DUF1934 domain-containing protein -
  LCH16_RS18365 (LCH16_18365) - 3728447..3728959 (+) 513 Protein_3565 bacteriocin biosynthesis protein AlbG -
  LCH16_RS18370 (LCH16_18370) - 3728966..3730343 (-) 1378 Protein_3566 YncE family protein -
  LCH16_RS18375 (LCH16_18375) - 3730383..3731738 (-) 1356 WP_060673883.1 YncE family protein -
  LCH16_RS18380 (LCH16_18380) rapF 3731969..3733114 (+) 1146 WP_015418439.1 tetratricopeptide repeat protein Regulator
  LCH16_RS18385 (LCH16_18385) phrF 3733098..3733217 (+) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  LCH16_RS18390 (LCH16_18390) - 3733415..3733618 (+) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  LCH16_RS18395 (LCH16_18395) - 3733632..3733835 (+) 204 WP_007407641.1 hypothetical protein -
  LCH16_RS18400 (LCH16_18400) - 3733870..3734055 (+) 186 WP_007407642.1 DUF4177 domain-containing protein -
  LCH16_RS18405 (LCH16_18405) - 3734241..3734522 (+) 282 WP_045209208.1 hypothetical protein -
  LCH16_RS18410 (LCH16_18410) - 3734566..3735078 (+) 513 WP_060673881.1 stage II sporulation protein M -
  LCH16_RS18415 (LCH16_18415) - 3735669..3735887 (-) 219 WP_060673879.1 LuxR C-terminal-related transcriptional regulator -
  LCH16_RS18420 (LCH16_18420) speB 3736055..3736927 (-) 873 WP_007407646.1 agmatinase -
  LCH16_RS18425 (LCH16_18425) speE 3736986..3737816 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45569.65 Da        Isoelectric Point: 4.5769

>NTDB_id=608710 LCH16_RS18380 WP_015418439.1 3731969..3733114(+) (rapF) [Bacillus velezensis strain CSUSB3]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLRDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=608710 LCH16_RS18380 WP_015418439.1 3731969..3733114(+) (rapF) [Bacillus velezensis strain CSUSB3]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCATAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTATTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATCGCCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(189-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.478

100

0.785
  rapC Bacillus subtilis subsp. subtilis str. 168

56.579

99.738

0.564