Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LCH16_RS11140 Genome accession   NZ_CP083943
Coordinates   2297503..2298111 (+) Length   202 a.a.
NCBI ID   WP_012117837.1    Uniprot ID   A0AAP5V0D3
Organism   Bacillus velezensis strain CSUSB3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2292503..2303111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH16_RS11100 (LCH16_11100) - 2293556..2294062 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  LCH16_RS11105 (LCH16_11105) - 2294201..2294614 (+) 414 WP_053573251.1 Hsp20/alpha crystallin family protein -
  LCH16_RS11110 (LCH16_11110) - 2294644..2295078 (-) 435 WP_053573252.1 YppG family protein -
  LCH16_RS11115 (LCH16_11115) - 2295265..2295447 (+) 183 WP_003153532.1 YppF family protein -
  LCH16_RS11120 (LCH16_11120) - 2295486..2295854 (-) 369 WP_007409492.1 YppE family protein -
  LCH16_RS11125 (LCH16_11125) - 2295900..2296145 (-) 246 WP_012117836.1 DUF5446 family protein -
  LCH16_RS11130 (LCH16_11130) sspM 2296351..2296455 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  LCH16_RS11135 (LCH16_11135) - 2296499..2297461 (-) 963 WP_015417701.1 DUF2515 domain-containing protein -
  LCH16_RS11140 (LCH16_11140) recU 2297503..2298111 (+) 609 WP_012117837.1 Holliday junction resolvase RecU Machinery gene
  LCH16_RS11145 (LCH16_11145) - 2298150..2300927 (+) 2778 WP_060674154.1 PBP1A family penicillin-binding protein -
  LCH16_RS11150 (LCH16_11150) - 2301086..2302236 (+) 1151 WP_094031235.1 IS3 family transposase -
  LCH16_RS11155 (LCH16_11155) - 2302294..2302785 (-) 492 WP_033574712.1 YpoC family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=608675 LCH16_RS11140 WP_012117837.1 2297503..2298111(+) (recU) [Bacillus velezensis strain CSUSB3]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=608675 LCH16_RS11140 WP_012117837.1 2297503..2298111(+) (recU) [Bacillus velezensis strain CSUSB3]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCTCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891