Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LCH16_RS08580 Genome accession   NZ_CP083943
Coordinates   1707255..1708154 (+) Length   299 a.a.
NCBI ID   WP_061890597.1    Uniprot ID   -
Organism   Bacillus velezensis strain CSUSB3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1702255..1713154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH16_RS08560 (LCH16_08560) - 1702945..1704648 (+) 1704 WP_061890596.1 hypothetical protein -
  LCH16_RS08565 (LCH16_08565) - 1704645..1704926 (+) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  LCH16_RS08570 (LCH16_08570) sucC 1705101..1706258 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  LCH16_RS08575 (LCH16_08575) sucD 1706287..1707189 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  LCH16_RS08580 (LCH16_08580) dprA 1707255..1708154 (+) 900 WP_061890597.1 DNA-processing protein DprA Machinery gene
  LCH16_RS08585 (LCH16_08585) topA 1708336..1710411 (+) 2076 WP_007409771.1 type I DNA topoisomerase -
  LCH16_RS08590 (LCH16_08590) trmFO 1710476..1711783 (+) 1308 WP_061890598.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LCH16_RS08595 (LCH16_08595) xerC 1711853..1712770 (+) 918 WP_039251511.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32883.04 Da        Isoelectric Point: 7.8285

>NTDB_id=608670 LCH16_RS08580 WP_061890597.1 1707255..1708154(+) (dprA) [Bacillus velezensis strain CSUSB3]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVM
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=608670 LCH16_RS08580 WP_061890597.1 1707255..1708154(+) (dprA) [Bacillus velezensis strain CSUSB3]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCATTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGAGAAGGCATTACTGTCATG
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAGCTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.569

100

0.706
  dprA Lactococcus lactis subsp. cremoris KW2

41.667

88.294

0.368