Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   LCH16_RS07505 Genome accession   NZ_CP083943
Coordinates   1451681..1452145 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain CSUSB3     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1446681..1457145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH16_RS07485 (LCH16_07485) - 1447162..1448982 (+) 1821 WP_015417363.1 PAS domain-containing protein -
  LCH16_RS07490 (LCH16_07490) - 1448963..1450176 (-) 1214 Protein_1415 aminotransferase A -
  LCH16_RS07495 (LCH16_07495) - 1450377..1450538 (-) 162 WP_007409608.1 hypothetical protein -
  LCH16_RS07500 (LCH16_07500) cheV 1450727..1451638 (+) 912 WP_039251615.1 chemotaxis protein CheV -
  LCH16_RS07505 (LCH16_07505) kre 1451681..1452145 (-) 465 WP_003154622.1 YkyB family protein Regulator
  LCH16_RS07510 (LCH16_07510) - 1452268..1453560 (-) 1293 WP_015239757.1 MFS transporter -
  LCH16_RS07515 (LCH16_07515) - 1453636..1454130 (-) 495 WP_088462390.1 L,D-transpeptidase family protein -
  LCH16_RS07520 (LCH16_07520) - 1454205..1455068 (-) 864 WP_060675295.1 metallophosphoesterase -
  LCH16_RS07525 (LCH16_07525) fadH 1455213..1455977 (+) 765 WP_061861423.1 2,4-dienoyl-CoA reductase -
  LCH16_RS07530 (LCH16_07530) - 1456091..1456639 (+) 549 WP_031378778.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=608667 LCH16_RS07505 WP_003154622.1 1451681..1452145(-) (kre) [Bacillus velezensis strain CSUSB3]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=608667 LCH16_RS07505 WP_003154622.1 1451681..1452145(-) (kre) [Bacillus velezensis strain CSUSB3]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929