Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NMD25_RS08625 Genome accession   NZ_CP101010
Coordinates   1798890..1800317 (-) Length   475 a.a.
NCBI ID   WP_370597334.1    Uniprot ID   -
Organism   Escherichia coli strain ET76     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1793890..1805317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD25_RS08595 (NMD25_08555) yeeZ 1793945..1794769 (+) 825 WP_023565114.1 SDR family oxidoreductase -
  NMD25_RS08600 (NMD25_08560) yeeY 1794815..1795744 (+) 930 WP_023565113.1 LysR substrate-binding domain-containing protein -
  NMD25_RS08605 (NMD25_08565) yoeI 1795959..1796021 (+) 63 WP_113706575.1 membrane protein YoeI -
  NMD25_RS08610 (NMD25_08570) plaP 1796011..1797369 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NMD25_RS08615 (NMD25_08575) tsuA 1797548..1798606 (+) 1059 WP_000492310.1 thiosulfate utilization transporter TsuA/YeeE -
  NMD25_RS08620 (NMD25_08580) tsuB 1798620..1798847 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NMD25_RS08625 (NMD25_08585) sbcB 1798890..1800317 (-) 1428 WP_370597334.1 exodeoxyribonuclease I Machinery gene
  NMD25_RS08630 (NMD25_08590) dacD 1800526..1801692 (+) 1167 WP_032234908.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NMD25_RS08635 (NMD25_08595) sbmC 1801811..1802284 (+) 474 WP_032234906.1 DNA gyrase inhibitor SbmC -
  NMD25_RS08640 (NMD25_08600) yeeA 1802483..1803541 (+) 1059 WP_001200891.1 FUSC family protein -
  NMD25_RS08645 (NMD25_08605) tmaR 1803714..1804043 (+) 330 WP_000450409.1 DUF496 family protein -
  NMD25_RS08650 (NMD25_08610) - 1804144..1804509 (-) 366 WP_001280456.1 EutP/PduV family microcompartment system protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54516.77 Da        Isoelectric Point: 5.4700

>NTDB_id=608665 NMD25_RS08625 WP_370597334.1 1798890..1800317(-) (sbcB) [Escherichia coli strain ET76]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLRILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=608665 NMD25_RS08625 WP_370597334.1 1798890..1800317(-) (sbcB) [Escherichia coli strain ET76]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAGAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACATTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583