Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   LCH16_RS01805 Genome accession   NZ_CP083943
Coordinates   369930..370328 (-) Length   132 a.a.
NCBI ID   WP_039252825.1    Uniprot ID   -
Organism   Bacillus velezensis strain CSUSB3     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 364930..375328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH16_RS01780 (LCH16_01780) - 365102..366304 (+) 1203 WP_156240250.1 GTP-binding protein -
  LCH16_RS01785 (LCH16_01785) - 366369..367505 (+) 1137 WP_224462965.1 zinc-dependent alcohol dehydrogenase -
  LCH16_RS01790 (LCH16_01790) - 367520..367954 (+) 435 WP_007409358.1 RDD family protein -
  LCH16_RS01795 (LCH16_01795) - 368071..368349 (+) 279 WP_263612330.1 YckD family protein -
  LCH16_RS01800 (LCH16_01800) - 368453..369889 (+) 1437 WP_015416781.1 glycoside hydrolase family 1 protein -
  LCH16_RS01805 (LCH16_01805) nin/comJ 369930..370328 (-) 399 WP_039252825.1 competence protein ComJ Regulator
  LCH16_RS01810 (LCH16_01810) nucA/comI 370349..370786 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LCH16_RS01815 (LCH16_01815) hxlB 371144..371701 (-) 558 WP_224462966.1 6-phospho-3-hexuloisomerase -
  LCH16_RS01820 (LCH16_01820) hxlA 371698..372333 (-) 636 WP_015416785.1 3-hexulose-6-phosphate synthase -
  LCH16_RS01825 (LCH16_01825) - 372565..372927 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14993.97 Da        Isoelectric Point: 4.9712

>NTDB_id=608644 LCH16_RS01805 WP_039252825.1 369930..370328(-) (nin/comJ) [Bacillus velezensis strain CSUSB3]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAASM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=608644 LCH16_RS01805 WP_039252825.1 369930..370328(-) (nin/comJ) [Bacillus velezensis strain CSUSB3]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCTCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758