Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LCH16_RS00250 Genome accession   NZ_CP083943
Coordinates   45546..45836 (-) Length   96 a.a.
NCBI ID   WP_170936346.1    Uniprot ID   -
Organism   Bacillus velezensis strain CSUSB3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40546..50836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH16_RS00210 (LCH16_00210) darA 40563..40892 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  LCH16_RS00215 (LCH16_00215) - 40905..41345 (+) 441 WP_004264730.1 YaaR family protein -
  LCH16_RS00220 (LCH16_00220) holB 41357..42346 (+) 990 WP_224462943.1 DNA polymerase III subunit delta' -
  LCH16_RS00225 (LCH16_00225) ricT 42349..43176 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  LCH16_RS00230 (LCH16_00230) yabA 43191..43550 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  LCH16_RS00235 (LCH16_00235) - 43611..44354 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LCH16_RS00240 (LCH16_00240) - 44341..44640 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  LCH16_RS00245 (LCH16_00245) rsmI 44615..45496 (+) 882 WP_031379323.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LCH16_RS00250 (LCH16_00250) abrB 45546..45836 (-) 291 WP_170936346.1 transition state genes transcriptional regulator AbrB Regulator
  LCH16_RS00255 (LCH16_00255) metG 46319..48310 (+) 1992 WP_060675319.1 methionine--tRNA ligase -
  LCH16_RS00260 (LCH16_00260) - 48387..49154 (+) 768 WP_017419495.1 TatD family hydrolase -
  LCH16_RS00265 (LCH16_00265) - 49289..50614 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.62 Da        Isoelectric Point: 7.9639

>NTDB_id=608640 LCH16_RS00250 WP_170936346.1 45546..45836(-) (abrB) [Bacillus velezensis strain CSUSB3]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIKNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=608640 LCH16_RS00250 WP_170936346.1 45546..45836(-) (abrB) [Bacillus velezensis strain CSUSB3]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATACTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTAAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

96.875

100

0.969