Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   LCH15_RS20925 Genome accession   NZ_CP083938
Coordinates   4535757..4536161 (-) Length   134 a.a.
NCBI ID   WP_003071158.1    Uniprot ID   A0A5S4T294
Organism   Comamonas thiooxydans strain CSUSB4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4530757..4541161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH15_RS20910 (LCH15_20910) - 4532589..4534832 (-) 2244 WP_034353939.1 methyl-accepting chemotaxis protein -
  LCH15_RS20915 (LCH15_20915) - 4534852..4535379 (-) 528 WP_003071161.1 chemotaxis protein CheW -
  LCH15_RS20920 (LCH15_20920) - 4535395..4535757 (-) 363 WP_003071159.1 PleD family two-component system response regulator -
  LCH15_RS20925 (LCH15_20925) pilG 4535757..4536161 (-) 405 WP_003071158.1 PleD family two-component system response regulator Regulator
  LCH15_RS20930 (LCH15_20930) - 4536212..4536364 (-) 153 WP_034399566.1 rubredoxin -
  LCH15_RS20935 (LCH15_20935) - 4536480..4537448 (+) 969 WP_063664758.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LCH15_RS20940 (LCH15_20940) hemL 4537432..4538736 (+) 1305 WP_063664761.1 glutamate-1-semialdehyde 2,1-aminomutase -
  LCH15_RS20945 (LCH15_20945) - 4538899..4540671 (+) 1773 WP_224648851.1 alkaline phosphatase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14667.90 Da        Isoelectric Point: 6.9230

>NTDB_id=608629 LCH15_RS20925 WP_003071158.1 4535757..4536161(-) (pilG) [Comamonas thiooxydans strain CSUSB4]
MTASGAPLRVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALSKVNDYQPQLIFCDILMPKLDGYQTCAIIKRNARFA
NTPVVMLSSKDGVFDKARGRMVGCQDYLTKPFTKDQLLQAVQQFALQAADVGAA

Nucleotide


Download         Length: 405 bp        

>NTDB_id=608629 LCH15_RS20925 WP_003071158.1 4535757..4536161(-) (pilG) [Comamonas thiooxydans strain CSUSB4]
GTGACAGCATCTGGTGCGCCTTTGCGCGTTCTGGTCGTGGATGACAGCAATACCATCCGCCGCAGCGCTGAAATTTTCCT
CAAGCAAGGTGGTCACGAAGTTCTTCTTGCCGACGATGGCTTCGATGCCCTGTCCAAGGTCAATGACTACCAGCCCCAGC
TCATCTTCTGCGACATTCTGATGCCCAAACTCGATGGCTATCAGACCTGCGCCATCATCAAGCGCAATGCTCGCTTTGCC
AATACGCCCGTCGTGATGCTGTCATCCAAGGACGGTGTATTCGACAAGGCTCGCGGTCGCATGGTGGGCTGCCAGGACTA
TCTGACCAAACCGTTTACCAAAGATCAATTGCTGCAAGCCGTACAACAATTCGCGCTGCAAGCTGCAGATGTGGGAGCTG
CATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4T294

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

58.621

86.567

0.507