Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NMD26_RS08430 Genome accession   NZ_CP101005
Coordinates   1753774..1755198 (-) Length   474 a.a.
NCBI ID   WP_370621136.1    Uniprot ID   -
Organism   Escherichia coli strain ET82     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1748774..1760198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD26_RS08400 (NMD26_08350) yeeZ 1748829..1749653 (+) 825 WP_021512364.1 SDR family oxidoreductase -
  NMD26_RS08405 (NMD26_08355) yeeY 1749699..1750628 (+) 930 WP_370621132.1 LysR substrate-binding domain-containing protein -
  NMD26_RS08410 (NMD26_08360) yoeI 1750843..1750905 (+) 63 WP_010723108.1 membrane protein YoeI -
  NMD26_RS08415 (NMD26_08365) plaP 1750895..1752253 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NMD26_RS08420 (NMD26_08370) tsuA 1752432..1753490 (+) 1059 WP_370621134.1 thiosulfate utilization transporter TsuA/YeeE -
  NMD26_RS08425 (NMD26_08375) tsuB 1753504..1753731 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NMD26_RS08430 (NMD26_08380) sbcB 1753774..1755198 (-) 1425 WP_370621136.1 exodeoxyribonuclease I Machinery gene
  NMD26_RS08435 (NMD26_08385) - 1755380..1756558 (+) 1179 WP_114692695.1 site-specific integrase -
  NMD26_RS08440 (NMD26_08390) - 1756539..1756730 (-) 192 WP_000132739.1 AlpA family transcriptional regulator -
  NMD26_RS08445 (NMD26_08395) yfdT 1756819..1757124 (-) 306 WP_000206732.1 protein YfdT -
  NMD26_RS08450 (NMD26_08400) - 1757124..1757489 (-) 366 WP_129930977.1 hypothetical protein -
  NMD26_RS08455 (NMD26_08405) - 1757533..1758111 (-) 579 WP_128424535.1 HNH endonuclease signature motif containing protein -
  NMD26_RS08460 (NMD26_08410) - 1758098..1758274 (-) 177 WP_001614322.1 DUF2737 family protein -
  NMD26_RS08465 (NMD26_08415) - 1758285..1758581 (-) 297 WP_094319198.1 phage anti-RecBCD protein -
  NMD26_RS08470 (NMD26_08420) - 1758605..1758988 (-) 384 WP_000951325.1 hypothetical protein -
  NMD26_RS08475 (NMD26_08425) - 1758988..1759593 (-) 606 WP_000031367.1 ERF family protein -
  NMD26_RS08480 (NMD26_08430) - 1759604..1759774 (-) 171 WP_000050554.1 hypothetical protein -
  NMD26_RS08485 (NMD26_08435) kil 1759850..1760002 (-) 153 WP_124326187.1 host cell division inhibitory peptide Kil -
  NMD26_RS08490 - 1759987..1760121 (-) 135 WP_000972063.1 hypothetical protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54382.62 Da        Isoelectric Point: 5.4700

>NTDB_id=608585 NMD26_RS08430 WP_370621136.1 1753774..1755198(-) (sbcB) [Escherichia coli strain ET82]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYNPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLRILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=608585 NMD26_RS08430 WP_370621136.1 1753774..1755198(-) (sbcB) [Escherichia coli strain ET82]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACAATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAGAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAATATG
CCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584