Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   JF634_RS07215 Genome accession   NZ_CP083930
Coordinates   1438306..1441674 (+) Length   1122 a.a.
NCBI ID   WP_002642908.1    Uniprot ID   V9H7P7
Organism   Simonsiella muelleri strain DSM 2579     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1433306..1446674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JF634_RS07190 (JF634_07190) - 1433809..1434624 (+) 816 WP_040629492.1 hypothetical protein -
  JF634_RS07195 (JF634_07195) lpdA 1434711..1436144 (+) 1434 WP_002642912.1 dihydrolipoyl dehydrogenase -
  JF634_RS07200 (JF634_07200) - 1436506..1436871 (+) 366 WP_002642911.1 hypothetical protein -
  JF634_RS07205 (JF634_07205) - 1436952..1437158 (-) 207 WP_002642910.1 (2Fe-2S)-binding protein -
  JF634_RS07210 (JF634_07210) galU 1437342..1438226 (+) 885 WP_002642909.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  JF634_RS07215 (JF634_07215) recC 1438306..1441674 (+) 3369 WP_002642908.1 exodeoxyribonuclease V subunit gamma Machinery gene
  JF634_RS07220 (JF634_07220) - 1441834..1442508 (-) 675 WP_002642907.1 DnaA ATPase domain-containing protein -
  JF634_RS07225 (JF634_07225) - 1442759..1443283 (+) 525 WP_002642906.1 Spy/CpxP family protein refolding chaperone -
  JF634_RS07230 (JF634_07230) - 1443547..1444470 (+) 924 WP_002642905.1 OmpA family protein -

Sequence

Protein


Download         Length: 1122 a.a.        Molecular weight: 129248.78 Da        Isoelectric Point: 5.0324

>NTDB_id=608564 JF634_RS07215 WP_002642908.1 1438306..1441674(+) (recC) [Simonsiella muelleri strain DSM 2579]
MLHLYQSNRLEDLAEMLATLHAVQPVPSSFAPEQIVVQSQGMRRFINQYLAKKQGIAANIQFSLPAGFSFRLMRETMPDT
PELNPFDTEVMRWRLLDLFQSDEFQQDEFQAARTVLHTYLQNGDYAAYQLAGQLADVFDQYLVYRPNWIETWHKGQLVDG
LSDEQIWQAPLWRYLDDGRQTAPHRVQLWYNLMNILDNPPDWLPERFFVFGIATLAPMYLELLIRLSKMREVHIFALNPS
AEYWGQVIEPSQILDKSEILDLSLQGHPLLASLGKQGRDFFDALAEADVAVDVSAYDDEYFSGSLLHQLQRDIQTQTLPE
NSQWREINQTDSENSLDYLKHHDRSIQIHSAHSPLRELQILKDQLLELLDKNPNWRPHDIAVLTPHIEPYAPYLQAVFGQ
ETGSGQALPYSLSDVKLSRQQPFLYALEQVLDLLTSRFEVDKLLGVLDNEIILQKFDLTKKDLPLIHDTVAKLNIHWGAN
SEQRAQFGDRQRLFTWQQGLERIVLGWMLPENTRQSLWQGMSPWYTRPDYLEILSKFVLLIRVLTKSQQKWQKPADVAIW
TERLRELVNQLFLPNDEDRDVIQKLEQSLSEWIAESELAHFHHNLSPEVVIQHIKRFLNQSDEAGFLRGGITFCGMVPMR
SLPFKVIALIGLNDGDFPRNTKAASFDLIAKHPKKGDRARRDDDRYLFLEALFSARDVLYLSFVGKDIRTDEVRAPSTLL
NELVDCVADMAGVSSGLLLSEWVVAHPLQAFSRQYFISNKSDNLIKSVNYNELISSRTDYADALNQPVKPLGDFFRQPEK
LIHQSDELIEQNSFIQFWRNPIRSYLRDSLNWQPPYLHMEWDAKEPFEPTKIRLLSDAYVLARRKNQSFEELAQELTAQS
LLPTGVLGKLVQRDFAAQAAMLDGELLHSPALAERSGMLHMESGSLNYRLNHLTQCGQMIYASQFLRESNEHGKLSASDK
IELILQHLIFCAATPDNQTQTENRQTYLIQLPDVLTFPAVSQDEALTILNIWIKYYKQGINSPLPFFPRVQLAAANKLFD
PKTGQLNREAAIKKAAEIYHKGYQGFAQEDYPEVKLVYGRNPDAEPPYLSDEFINLTIDLFENLQGSLKALEGKLENDEV
EQ

Nucleotide


Download         Length: 3369 bp        

>NTDB_id=608564 JF634_RS07215 WP_002642908.1 1438306..1441674(+) (recC) [Simonsiella muelleri strain DSM 2579]
ATGTTACATTTATATCAATCCAATCGCTTAGAAGATTTGGCGGAAATGTTGGCAACTTTGCACGCCGTTCAGCCTGTGCC
ATCGTCTTTTGCGCCCGAGCAAATTGTGGTGCAAAGTCAAGGAATGCGCCGATTTATTAATCAATATTTAGCAAAAAAAC
AAGGAATTGCAGCAAATATTCAATTCAGCCTGCCTGCTGGATTCAGTTTCCGTTTGATGCGCGAGACCATGCCCGATACG
CCCGAATTGAATCCGTTTGATACGGAAGTGATGCGTTGGCGGTTGTTGGATTTGTTCCAATCTGATGAATTTCAACAAGA
TGAGTTTCAGGCAGCCCGAACAGTGTTGCACACTTATTTGCAAAATGGCGATTATGCGGCGTATCAATTAGCGGGGCAAC
TGGCGGACGTATTTGACCAATATTTGGTTTATCGCCCGAATTGGATTGAAACGTGGCACAAAGGGCAATTAGTAGATGGA
TTGTCAGATGAGCAAATTTGGCAAGCACCGCTTTGGCGATATTTGGACGATGGGCGACAAACTGCGCCTCATCGTGTTCA
ATTGTGGTATAACTTAATGAATATTTTGGATAATCCACCTGATTGGCTGCCTGAAAGATTTTTTGTCTTCGGTATTGCCA
CGCTTGCACCAATGTATCTAGAATTATTGATACGTTTGTCAAAAATGCGTGAAGTGCATATTTTCGCATTGAATCCAAGT
GCAGAGTATTGGGGTCAAGTTATTGAACCATCACAAATTTTAGATAAATCTGAAATTTTAGATTTAAGTTTACAAGGACA
TCCCTTGTTGGCATCACTTGGAAAACAAGGACGCGATTTTTTTGATGCGTTGGCGGAAGCTGATGTAGCGGTTGATGTGA
GTGCGTATGATGATGAATATTTTTCAGGCAGTCTTTTGCATCAATTGCAACGCGATATTCAAACACAAACGCTGCCTGAA
AACAGCCAATGGCGTGAAATCAATCAAACTGATTCTGAAAATTCATTGGATTATCTGAAGCATCATGATCGCAGTATTCA
AATTCACAGTGCGCACAGTCCCTTGCGTGAATTACAAATTTTAAAAGATCAATTGCTTGAATTATTAGATAAAAATCCAA
ATTGGCGACCGCACGATATCGCTGTTCTCACGCCACACATTGAGCCGTATGCACCATATTTGCAGGCGGTTTTTGGGCAG
GAAACGGGCAGTGGGCAGGCGTTGCCTTATTCGCTTTCGGACGTGAAATTGTCACGCCAGCAGCCGTTTTTGTATGCGTT
GGAGCAGGTGTTGGATTTGTTGACCAGTCGGTTTGAAGTGGATAAATTGTTGGGTGTTTTGGATAATGAAATTATTTTAC
AAAAGTTTGATTTAACAAAAAAAGATTTGCCATTAATCCACGATACCGTAGCCAAATTAAACATTCATTGGGGGGCGAAC
AGCGAACAACGCGCTCAATTTGGTGATAGACAGCGATTATTCACATGGCAACAAGGTTTGGAGCGTATTGTGTTGGGTTG
GATGCTGCCTGAAAACACGCGCCAATCTTTGTGGCAGGGCATGAGTCCGTGGTATACGCGCCCTGATTATTTGGAAATTT
TGAGTAAATTTGTTTTGTTAATCAGAGTGCTGACTAAATCTCAACAAAAATGGCAAAAGCCTGCCGATGTAGCCATATGG
ACGGAGCGTCTGCGTGAATTGGTTAATCAGTTGTTTTTACCCAATGACGAAGACCGTGATGTGATTCAGAAGTTAGAACA
ATCACTTAGTGAATGGATAGCAGAAAGTGAATTGGCGCATTTTCATCATAATTTATCGCCAGAAGTGGTAATTCAGCATA
TTAAACGATTTTTAAATCAATCAGATGAGGCAGGATTTTTACGTGGAGGCATCACGTTTTGTGGCATGGTGCCAATGAGG
TCTTTGCCGTTCAAAGTGATTGCGCTGATTGGTTTGAATGATGGTGATTTTCCACGTAATACGAAAGCTGCCAGTTTTGA
TTTGATTGCGAAACACCCGAAAAAAGGCGATCGTGCTAGGCGTGATGATGATAGATATTTGTTTTTAGAAGCTTTATTTT
CAGCACGGGACGTGTTGTATTTGTCGTTTGTTGGTAAAGATATTCGCACCGATGAAGTCCGCGCGCCTTCTACTTTATTG
AATGAGTTGGTGGATTGTGTGGCAGATATGGCGGGTGTGTCATCGGGGTTGTTGTTATCGGAATGGGTGGTTGCCCATCC
TTTGCAAGCATTTTCACGACAGTATTTTATATCTAATAAATCAGATAATTTAATTAAATCAGTAAATTATAATGAATTAA
TTAGCAGTAGAACCGATTATGCTGATGCCTTGAATCAACCAGTCAAACCATTAGGCGATTTTTTCAGGCAGCCTGAAAAG
TTAATTCATCAATCAGATGAATTAATTGAACAAAATTCTTTTATTCAATTTTGGCGTAATCCCATTCGCAGTTATTTGCG
TGATTCATTGAATTGGCAACCGCCCTATTTGCACATGGAGTGGGACGCGAAAGAACCTTTTGAACCTACTAAGATTCGTT
TATTATCTGATGCTTATGTTTTAGCCAGACGCAAGAACCAATCATTTGAAGAGTTGGCGCAAGAATTGACGGCACAAAGT
TTGTTGCCAACTGGTGTATTGGGTAAATTGGTGCAACGTGATTTTGCGGCACAAGCGGCGATGTTGGACGGCGAATTGCT
GCATAGTCCTGCTTTGGCTGAACGCAGTGGCATGCTGCACATGGAATCAGGCAGCCTGAATTATCGTTTGAATCATTTGA
CGCAATGCGGACAAATGATTTACGCCAGTCAATTTTTGCGTGAATCCAATGAACATGGTAAATTGTCTGCATCAGATAAA
ATTGAATTGATTTTACAACATCTTATATTTTGTGCTGCCACGCCTGACAATCAAACACAGACTGAAAATCGTCAAACTTA
TTTGATTCAATTGCCTGATGTTTTAACTTTCCCAGCCGTGTCGCAAGATGAAGCTTTAACAATTCTAAATATTTGGATAA
AATATTATAAACAAGGAATTAATTCGCCATTGCCATTTTTCCCACGTGTGCAGTTGGCGGCGGCGAACAAATTATTTGAC
CCCAAAACAGGTCAGTTGAATCGTGAAGCGGCGATTAAAAAAGCAGCTGAAATTTATCACAAAGGTTATCAAGGATTTGC
GCAAGAAGATTATCCTGAAGTTAAATTGGTGTATGGGCGTAATCCCGATGCTGAACCACCGTATTTATCCGATGAATTTA
TAAATTTAACAATTGATTTATTTGAAAATTTGCAAGGCAGCCTGAAAGCGTTAGAGGGTAAATTGGAAAATGATGAAGTG
GAGCAATAA

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(809-1037)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V9H7P7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

50.045

98.841

0.495