Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   NMD26_RS03470 Genome accession   NZ_CP101005
Coordinates   708990..709649 (-) Length   219 a.a.
NCBI ID   WP_001221493.1    Uniprot ID   -
Organism   Escherichia coli strain ET82     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 703990..714649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD26_RS03445 (NMD26_03425) parE 704080..705972 (+) 1893 WP_185198818.1 DNA topoisomerase IV subunit B -
  NMD26_RS03450 (NMD26_03430) ygiN 706020..706334 (-) 315 WP_000958598.1 putative quinol monooxygenase -
  NMD26_RS03455 (NMD26_03435) mdaB 706365..706946 (-) 582 WP_000065430.1 NADPH:quinone oxidoreductase MdaB -
  NMD26_RS03460 (NMD26_03440) ygiZ 707266..707598 (+) 333 WP_000917684.1 DUF2645 family protein -
  NMD26_RS03465 (NMD26_03445) qseC 707644..708993 (-) 1350 WP_000673402.1 quorum sensing histidine kinase QseC -
  NMD26_RS03470 (NMD26_03450) ciaR 708990..709649 (-) 660 WP_001221493.1 quorum sensing response regulator transcription factor QseB Regulator
  NMD26_RS03475 (NMD26_03455) ygiW 709801..710193 (+) 393 WP_000712658.1 OB fold stress tolerance protein YgiW -
  NMD26_RS03480 (NMD26_03460) ygiV 710246..710728 (+) 483 WP_000183505.1 GyrI-like domain-containing protein -
  NMD26_RS03485 (NMD26_03465) mqsR 710933..711229 (+) 297 WP_000415584.1 type II toxin-antitoxin system toxin MqsR -
  NMD26_RS03490 (NMD26_03470) mqsA 711231..711626 (+) 396 WP_000650107.1 type II toxin-antitoxin system antitoxin MqsA -
  NMD26_RS03495 (NMD26_03475) ygiS 711759..713366 (+) 1608 WP_001295629.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 129248.78 Da        Isoelectric Point: 5.0324

Nucleotide


Download         Length: 0 bp        


Domains

Predicted by InterProScan.

RecC C-terminal domain (RecC_C)

(809-1037)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

50.045

98.841

0.495