Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   JF634_RS01570 Genome accession   NZ_CP083930
Coordinates   307410..309122 (-) Length   570 a.a.
NCBI ID   WP_002641403.1    Uniprot ID   V9HLX6
Organism   Simonsiella muelleri strain DSM 2579     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 302410..314122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JF634_RS01565 (JF634_01565) purM 306294..307331 (-) 1038 WP_002641404.1 phosphoribosylformylglycinamidine cyclo-ligase -
  JF634_RS01570 (JF634_01570) recD 307410..309122 (-) 1713 WP_002641403.1 exodeoxyribonuclease V subunit alpha Machinery gene
  JF634_RS01575 (JF634_01575) - 309222..309848 (-) 627 WP_002641402.1 hypothetical protein -
  JF634_RS01580 (JF634_01580) - 309853..310623 (-) 771 WP_002641401.1 tol-pal system YbgF family protein -
  JF634_RS01585 (JF634_01585) - 310680..311828 (-) 1149 WP_002641400.1 class I SAM-dependent RNA methyltransferase -
  JF634_RS01590 (JF634_01590) - 311872..312084 (-) 213 WP_002641399.1 PspC domain-containing protein -

Sequence

Protein


Download         Length: 570 a.a.        Molecular weight: 63430.17 Da        Isoelectric Point: 6.3744

>NTDB_id=608552 JF634_RS01570 WP_002641403.1 307410..309122(-) (recD) [Simonsiella muelleri strain DSM 2579]
MNESTNHSPAENVIALLQDYTPHLIDQISPFISRLFNALANGHAFIFVHADEAELLAQASPVVGQSDAPLVLWGNRLFLG
RMFQLEYDLANEIKRLSSPKHELAQPENIALSLQNWFPDERSRDQQTAAALALTQNFTVISGGPGTGKTTTVAKLLALLC
GEQQPRIALVAPTGKAAARMSDALKNALSKMSGLPENVAVFLAQLSGQTVHRLLGLKPPQMLPEYHAQHRLPLDIVVVDE
VSMLDSYLLLQLLQALPTHCRVILLGDENQLPSVNAGAVLSALVRSRFRLPENTQIQQILSSKQYEMLTPPVAKLTISQR
FDDNSGIGCVAKAVVAGDANLAWAQFSRFPDQLIAQQKTPEQQANLLYQQQQNYWQAIDNQDIQTAFSHQTDVVVLAARR
ADAELFNQAYRKVLQRYGRIAQPDTVWFAGQMLLITRNDPATNLYNGDIGIVMRQDIGLTAYFFDSENTFRAVPLSRLPA
HELAFAMTVHKSQGSEYEEVWLIPPKKSEDDESKQGFNRSLLYTAITRAKQKFVYWGDETSFQAACNNQETRRTALAQFL
LKIDGNSINQ

Nucleotide


Download         Length: 1713 bp        

>NTDB_id=608552 JF634_RS01570 WP_002641403.1 307410..309122(-) (recD) [Simonsiella muelleri strain DSM 2579]
ATGAACGAATCCACTAACCATTCACCAGCAGAAAACGTCATTGCATTATTACAAGATTATACTCCGCATCTCATTGACCA
AATTTCGCCATTTATTTCGCGTTTGTTCAATGCGTTGGCGAATGGACACGCGTTTATTTTTGTTCATGCAGACGAAGCCG
AATTATTGGCACAAGCCAGTCCCGTTGTCGGGCAATCCGATGCACCTTTGGTGTTGTGGGGCAACCGTTTATTTTTGGGA
AGAATGTTTCAATTAGAATACGATTTAGCAAATGAAATCAAACGATTGTCTTCGCCAAAACATGAGTTAGCGCAACCCGA
AAACATCGCGCTTTCATTGCAAAACTGGTTTCCTGATGAACGCAGTCGCGACCAACAAACCGCCGCCGCATTGGCATTGA
CGCAAAATTTTACCGTCATCAGTGGCGGGCCCGGAACAGGCAAAACCACCACAGTAGCAAAATTACTCGCGTTACTGTGT
GGTGAGCAGCAACCGCGTATCGCATTGGTTGCACCCACTGGTAAGGCGGCGGCGCGAATGTCAGACGCACTCAAAAATGC
GTTAAGCAAAATGTCGGGGCTGCCTGAAAATGTCGCGGTATTTTTGGCGCAATTGTCGGGGCAAACCGTGCATCGTTTGC
TCGGACTCAAACCCCCACAAATGCTGCCTGAATACCATGCGCAGCATCGTTTGCCATTGGATATTGTGGTGGTTGATGAA
GTATCCATGTTGGACAGCTATTTGTTGCTACAATTGCTGCAAGCCTTGCCGACTCATTGTCGTGTGATTTTGTTGGGTGA
TGAAAATCAGTTGCCGTCTGTGAATGCTGGTGCGGTGTTGTCGGCGTTGGTGCGCAGTCGTTTCAGGCTGCCTGAAAACA
CCCAAATTCAGCAAATTTTGTCGTCAAAACAATATGAAATGCTCACGCCGCCAGTGGCAAAATTAACCATCAGTCAACGA
TTTGATGATAACAGTGGCATTGGTTGCGTGGCAAAAGCGGTGGTGGCAGGCGATGCGAATTTGGCTTGGGCGCAATTTTC
GCGTTTTCCCGACCAACTCATTGCGCAACAAAAAACACCCGAACAACAAGCCAATTTATTGTATCAACAACAACAAAATT
ATTGGCAAGCCATTGATAATCAAGATATTCAAACAGCTTTTTCACATCAAACCGATGTGGTGGTATTGGCGGCTAGACGT
GCCGATGCAGAATTATTCAATCAGGCGTATCGCAAAGTTTTGCAGCGATACGGACGCATTGCGCAACCCGACACCGTGTG
GTTTGCGGGGCAAATGCTGCTGATTACGCGTAACGATCCTGCCACAAATCTATATAATGGTGATATTGGCATTGTGATGC
GGCAAGATATTGGTTTAACAGCTTATTTTTTTGATTCAGAGAATACATTCCGTGCTGTGCCATTGAGCCGTTTGCCAGCG
CATGAGTTGGCGTTTGCGATGACGGTACACAAAAGCCAAGGTTCAGAATATGAAGAAGTGTGGTTGATACCGCCCAAAAA
ATCAGAAGATGATGAATCCAAACAAGGGTTTAATCGTTCTTTACTTTATACAGCCATCACACGTGCCAAGCAAAAATTTG
TGTATTGGGGTGATGAAACCAGTTTTCAGGCAGCCTGCAATAATCAGGAAACTCGGCGTACGGCGTTGGCACAATTTTTG
TTGAAAATAGACGGCAATTCAATAAATCAGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(484-532)

AAA domain (AAA_30)

(122-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V9HLX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

49.117

99.298

0.488