Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LCC91_RS12420 Genome accession   NZ_CP083911
Coordinates   2632433..2633992 (-) Length   519 a.a.
NCBI ID   WP_043700128.1    Uniprot ID   A0A554X759
Organism   Tepidimonas taiwanensis strain LMG 22826     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2627433..2638992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCC91_RS12400 (LCC91_12400) - 2627931..2629427 (+) 1497 WP_224440884.1 IS5 family transposase -
  LCC91_RS12405 (LCC91_12405) - 2629450..2629728 (+) 279 Protein_2437 MaoC/PaaZ C-terminal domain-containing protein -
  LCC91_RS12410 (LCC91_12410) pcaF 2629796..2630998 (+) 1203 WP_043700122.1 3-oxoadipyl-CoA thiolase -
  LCC91_RS12415 (LCC91_12415) - 2631211..2632416 (-) 1206 WP_043700125.1 class I SAM-dependent RNA methyltransferase -
  LCC91_RS12420 (LCC91_12420) rpoN/rpoN1 2632433..2633992 (-) 1560 WP_043700128.1 RNA polymerase factor sigma-54 Machinery gene
  LCC91_RS12425 (LCC91_12425) lptB 2633998..2634756 (-) 759 WP_043700131.1 LPS export ABC transporter ATP-binding protein -
  LCC91_RS12430 (LCC91_12430) lptA 2634753..2635397 (-) 645 WP_058615842.1 lipopolysaccharide transport periplasmic protein LptA -
  LCC91_RS12435 (LCC91_12435) - 2635512..2636138 (-) 627 WP_043700139.1 thiol:disulfide interchange protein DsbA/DsbL -
  LCC91_RS12440 (LCC91_12440) - 2636215..2636904 (-) 690 WP_052231492.1 SPOR domain-containing protein -
  LCC91_RS12445 (LCC91_12445) argS 2636940..2638622 (-) 1683 WP_043700142.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 57132.17 Da        Isoelectric Point: 4.5999

>NTDB_id=608472 LCC91_RS12420 WP_043700128.1 2632433..2633992(-) (rpoN/rpoN1) [Tepidimonas taiwanensis strain LMG 22826]
MKAGLALRVTQHLTLTPQLQQSIRLLQLSTLEVTQEVEQMLADNPFLERAEDDDAETPPAAPADEERDGATAPVDDADPP
DTAAVWDEAGPRSGVEADWPARLDEDAGGWSADESPGADGPDWSWEGPGLDRDGRDLDDENRPAASELASAHERLQDHLH
RQALALHLSDEERAALYFLIESLDDDGYLTEPLEALSDAFWRQCHPDDAPPDPDARDEVLALLRRALGWLQAMEPAGVGA
RDLGECLRLQIGELPNTPAARAALALCAQPLEWIARRDTRRLAQATGLGEADVRAGLAVLTRLEPKPGRRFADAERQIVV
PDVIVTVRAGVCDVQLNPAVLPRLRVTDVYAQALRGQRHGDLQQRLQEARWFIKNLQQRFDTILRVAQAIVERQRNFFLH
GAVGMRPLVLRDIAEALGLHESTISRVTTAKYMATPFGTYEFKYFFGSGLATDAGGNASSTAVRALIKQLIAAEDPRQPL
SDGRIAELLKEQGIECARRTVAKYRESLRIPTASLRKSL

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=608472 LCC91_RS12420 WP_043700128.1 2632433..2633992(-) (rpoN/rpoN1) [Tepidimonas taiwanensis strain LMG 22826]
ATGAAGGCGGGACTCGCGCTGCGCGTCACGCAGCATCTCACGTTGACGCCCCAGTTGCAGCAGTCGATCCGGCTGCTGCA
GCTGTCCACGCTCGAGGTCACGCAGGAAGTCGAGCAGATGCTCGCCGACAACCCCTTTCTCGAGCGGGCGGAGGACGACG
ACGCGGAGACACCGCCCGCCGCCCCGGCGGACGAGGAGCGCGACGGCGCGACGGCCCCGGTGGACGACGCCGATCCCCCG
GACACTGCGGCGGTGTGGGACGAGGCCGGGCCCCGGTCGGGCGTGGAGGCCGACTGGCCCGCGCGGCTGGACGAGGACGC
GGGCGGCTGGAGTGCCGACGAGTCGCCCGGAGCCGACGGTCCGGACTGGTCGTGGGAAGGCCCCGGGCTGGACCGCGACG
GCCGCGACCTCGACGACGAGAACCGTCCGGCAGCCAGCGAACTGGCCAGCGCGCACGAGCGGCTGCAGGACCACCTGCAC
CGGCAGGCGCTGGCGCTGCACCTAAGCGACGAGGAGCGCGCGGCGCTGTACTTCCTGATCGAATCGCTGGACGACGACGG
CTACCTGACGGAGCCGCTGGAGGCGTTGAGCGACGCGTTCTGGCGGCAGTGCCACCCCGACGATGCGCCGCCGGACCCCG
ATGCGCGCGATGAAGTGCTGGCGCTGCTGCGCCGCGCGCTCGGGTGGCTGCAGGCGATGGAGCCCGCGGGCGTCGGGGCG
CGCGACCTGGGCGAATGCCTGCGGCTGCAGATCGGCGAGCTGCCCAACACGCCGGCGGCGCGCGCCGCGCTGGCGCTGTG
CGCCCAGCCGCTGGAGTGGATCGCGCGGCGCGACACGCGGCGGCTCGCCCAGGCCACCGGCCTGGGCGAAGCCGATGTGC
GCGCCGGGCTCGCGGTGCTCACGCGCCTCGAGCCCAAACCCGGGCGGCGGTTTGCCGATGCCGAGCGGCAGATCGTCGTG
CCGGACGTGATCGTCACCGTGCGCGCGGGTGTGTGCGACGTGCAGCTCAACCCCGCGGTGCTGCCGCGCCTGCGCGTGAC
CGACGTGTACGCGCAGGCGCTGCGCGGCCAGCGCCACGGTGACCTGCAGCAGCGGCTGCAGGAGGCGCGCTGGTTCATCA
AAAACCTGCAGCAGCGCTTCGACACCATCCTGCGCGTGGCGCAGGCGATCGTCGAGCGCCAGCGCAACTTCTTCCTGCAT
GGCGCGGTGGGCATGCGCCCGCTGGTGCTGCGCGACATCGCCGAGGCACTGGGGCTGCACGAGTCGACCATCAGCCGCGT
CACCACCGCCAAGTACATGGCCACGCCGTTTGGCACGTACGAGTTCAAATATTTTTTCGGCTCGGGGCTGGCCACCGACG
CGGGTGGCAACGCCTCCAGCACCGCGGTGCGGGCGCTGATCAAGCAGCTCATCGCCGCCGAGGATCCGCGCCAGCCCCTG
AGCGACGGGCGCATCGCCGAGTTGCTCAAGGAGCAGGGCATCGAGTGCGCGCGCCGCACCGTGGCCAAGTACCGCGAGTC
GCTGCGCATCCCGACCGCCAGCCTGCGCAAATCCCTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(147-350)

Sigma-54, DNA binding domain (Sigma54_DBD)

(362-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A554X759

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

49.905

100

0.507