Detailed information NTG0608459

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NMD29_RS22560
• Genome accession: NZ_CP100996
• Coordinates: 4585924..4586949 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain ET151
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4580924..4591949

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMD29_RS22540 (NMD29_22375)	metJ	4581985..4582302 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
NMD29_RS22545 (NMD29_22380)	yiiX	4582486..4583094 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
NMD29_RS22550 (NMD29_22385)	rpmE	4583155..4583367 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
NMD29_RS22555 (NMD29_22390)	priA	4583570..4585768 (+)	2199	WP_001424430.1	primosomal protein N'	Machinery gene
NMD29_RS22560 (NMD29_22395)	cytR	4585924..4586949 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
NMD29_RS22565 (NMD29_22400)	ftsN	4587041..4588000 (+)	960	WP_000068828.1	cell division protein FtsN	-
NMD29_RS22570 (NMD29_22405)	hslV	4588093..4588623 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
NMD29_RS22575 (NMD29_22410)	hslU	4588633..4589964 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
NMD29_RS22580 (NMD29_22415)	menA	4590031..4590957 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NMD29_RS22585 (NMD29_22420)	rraA	4591050..4591535 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
NMD29_RS22590 (NMD29_22425)	zapB	4591620..4591865 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=608459 NMD29_RS22560 WP_000644904.1 4585924..4586949(+) (cytR) [Escherichia coli strain ET151]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=608459 NMD29_RS22560 WP_000644904.1 4585924..4586949(+) (cytR) [Escherichia coli strain ET151]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628