Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   NMD30_RS22275 Genome accession   NZ_CP100994
Coordinates   4555671..4557500 (-) Length   609 a.a.
NCBI ID   WP_370612866.1    Uniprot ID   -
Organism   Escherichia coli strain ET201     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4550671..4562500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD30_RS22245 (NMD30_22085) bioP 4550946..4551845 (-) 900 WP_001196238.1 biotin transporter -
  NMD30_RS22250 (NMD30_22090) - 4551937..4552299 (-) 363 WP_000158817.1 hypothetical protein -
  NMD30_RS22255 (NMD30_22095) yigL 4552364..4553164 (-) 801 WP_000285352.1 sugar/pyridoxal phosphate phosphatase YigL -
  NMD30_RS22260 (NMD30_22100) pldB 4553172..4554194 (-) 1023 WP_000487654.1 lysophospholipase L2 -
  NMD30_RS22265 (NMD30_22105) rhtB 4554305..4554925 (+) 621 WP_000171710.1 homoserine/homoserine lactone efflux protein -
  NMD30_RS22270 (NMD30_22110) rhtC 4554987..4555607 (-) 621 WP_000928821.1 threonine export protein RhtC -
  NMD30_RS22275 (NMD30_22115) recQ 4555671..4557500 (-) 1830 WP_370612866.1 ATP-dependent DNA helicase RecQ Machinery gene
  NMD30_RS22280 (NMD30_22120) pldA 4557633..4558502 (-) 870 WP_001259700.1 phospholipase A -
  NMD30_RS22285 (NMD30_22125) yigI 4558667..4559134 (+) 468 WP_001277142.1 acyl-CoA thioesterase YigI -
  NMD30_RS22290 (NMD30_22130) rarD 4559186..4560076 (+) 891 WP_000339107.1 EamA family transporter RarD -
  NMD30_RS22295 (NMD30_22135) - 4560566..4560946 (+) 381 WP_000031249.1 DUF2628 domain-containing protein -
  NMD30_RS22300 (NMD30_22140) corA 4560989..4561939 (-) 951 WP_000947159.1 magnesium/cobalt transporter CorA -
  NMD30_RS22305 (NMD30_22145) ysgD 4562091..4562147 (-) 57 WP_211180520.1 protein YsgD -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 68391.56 Da        Isoelectric Point: 7.2544

>NTDB_id=608381 NMD30_RS22275 WP_370612866.1 4555671..4557500(-) (recQ) [Escherichia coli strain ET201]
MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKD
QVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP
EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI
IYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESY
YQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNVMGAFAEAQTCRRLVLLNYFGEGRQEPCGNC
DICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLG
LVTQNIAQHSALQLTEAARPVLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFND
ATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDGDDEE

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=608381 NMD30_RS22275 WP_370612866.1 4555671..4557500(-) (recQ) [Escherichia coli strain ET201]
GTGGCGCAGGCGGAAGTGTTGAATCTGGAGTCCGGAGCTAAACAGGTTTTACAAGAAACCTTTGGCTACCAACAGTTTCG
CCCCGGCCAGGAAGAAATTATCGACACTGTGCTTTCCGGTCGCGATTGTCTGGTTGTTATGCCCACTGGTGGCGGAAAAT
CCCTTTGCTATCAAATTCCTGCCTTATTGCTAAACGGCCTTACCGTGGTTGTTTCACCGCTGATTTCGTTGATGAAAGAT
CAGGTGGATCAACTGCAAGCCAACGGCGTGGCGGCGGCGTGCCTTAACTCGACGCAAACCCGCGAGCAGCAACTTGAAGT
GATGACAGGCTGTCGCACCGGGCAAATCCGCCTGCTTTATATCGCGCCGGAACGCCTGATGCTGGATAACTTTCTTGAGC
ATCTGGCGCACTGGAATCCGGTGTTATTAGCCGTTGATGAAGCGCACTGTATCTCCCAATGGGGCCACGATTTCCGCCCG
GAATATGCCGCGCTCGGTCAGTTGCGCCAGCGGTTCCCGACGCTGCCGTTTATGGCGCTGACTGCCACAGCCGACGACAC
CACGCGCCAGGATATCGTGCGCTTGCTGGGGCTGAACGATCCGCTGATTCAAATCAGCAGTTTTGACCGTCCGAATATTC
GCTACATGCTGATGGAGAAATTCAAACCGCTCGATCAGTTGATGCGCTACGTGCAGGAACAGCGCGGTAAGTCCGGCATT
ATCTACTGCAACAGCCGGGCGAAAGTAGAAGACACCGCTGCGCGCCTGCAAAGCAAGGGTATTAGCGCGGCGGCCTATCA
TGCCGGGCTGGAAAATAATGTCCGCGCCGACGTGCAGGAGAAATTCCAGCGCGATGACCTGCAAATTGTGGTGGCGACGG
TGGCGTTCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTAT
TATCAGGAAACCGGTCGCGCCGGGCGTGATGGCCTGCCCGCGGAAGCGATGCTGTTTTACGATCCGGCCGATATGGCGTG
GCTGCGCCGTTGCCTGGAAGAGAAGCCGCAGGGGCAGTTACAGGATATCGAACGTCATAAACTCAATGTGATGGGCGCTT
TTGCCGAAGCGCAAACTTGCCGTCGTCTGGTATTGCTGAACTATTTTGGCGAAGGGCGGCAGGAGCCGTGCGGGAACTGC
GATATCTGCCTCGATCCGCCGAAACAGTACGACGGTTCAACCGATGCTCAGATTGCCCTTTCCACCATTGGTCGTGTGAA
TCAGCGGTTTGGGATGGGTTATGTGGTGGAAGTGATTCGTGGTGCTAATAACCAGCGTATCCGCGACTATGGTCATGACA
AACTGAAAGTCTATGGCATGGGCCGTGATAAAAGCCATGAACATTGGGTGAGCGTGATCCGCCAGCTGATTCACCTCGGC
CTGGTGACGCAAAATATTGCCCAGCATTCTGCCCTACAACTGACAGAGGCCGCGCGCCCGGTGCTGCGCGGCGAATCCTC
TTTGCAACTTGCCGTGCCGCGTATCGTGGCGCTCAAACCGAAAGCGATGCAGAAATCGTTCGGCGGCAACTATGATCGCA
AACTGTTCGCCAAATTACGCAAACTGCGTAAATCGATTGCCGATGAAAGTAATGTCCCGCCGTACGTGGTGTTTAACGAC
GCAACCTTGATTGAGATGGCTGAACAGATGCCGATCACCGCCAGCGAAATGCTCAGCGTTAACGGCGTTGGGATGCGCAA
GCTGGAACGCTTTGGTAAACCGTTTATGGCGCTGATTCGTGCGCATGTCGATGGCGACGACGAAGAGTAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(28-187)

Helicase conserved C-terminal domain (Helicase_C)

(223-330)

RecQ zinc-binding (RecQ_Zn_bind)

(343-404)

HRDC domain (HRDC)

(533-599)

RQC domain (RQC)

(406-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.203

97.209

0.391