Detailed information NTG0608378

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NMD30_RS21660
• Genome accession: NZ_CP100994
• Coordinates: 4426270..4427295 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain ET201
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4421270..4432295

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMD30_RS21640 (NMD30_21480)	metJ	4422331..4422648 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
NMD30_RS21645 (NMD30_21485)	yiiX	4422832..4423440 (+)	609	WP_000797343.1	YiiX family permuted papain-like enzyme	-
NMD30_RS21650 (NMD30_21490)	rpmE	4423501..4423713 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
NMD30_RS21655 (NMD30_21495)	priA	4423916..4426114 (+)	2199	WP_001491430.1	primosomal protein N'	Machinery gene
NMD30_RS21660 (NMD30_21500)	cytR	4426270..4427295 (+)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
NMD30_RS21665 (NMD30_21505)	ftsN	4427387..4428346 (+)	960	WP_000068834.1	cell division protein FtsN	-
NMD30_RS21670 (NMD30_21510)	hslV	4428439..4428969 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
NMD30_RS21675 (NMD30_21515)	hslU	4428979..4430310 (+)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
NMD30_RS21680 (NMD30_21520)	menA	4430377..4431303 (+)	927	WP_040063905.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NMD30_RS21685 (NMD30_21525)	rraA	4431396..4431881 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=608378 NMD30_RS21660 WP_000644908.1 4426270..4427295(+) (cytR) [Escherichia coli strain ET201]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=608378 NMD30_RS21660 WP_000644908.1 4426270..4427295(+) (cytR) [Escherichia coli strain ET201]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTAACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAGCAGCTACTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATTGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCACGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625