Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NMD30_RS08360 Genome accession   NZ_CP100994
Coordinates   1745291..1746718 (-) Length   475 a.a.
NCBI ID   WP_000980586.1    Uniprot ID   -
Organism   Escherichia coli strain ET201     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1740291..1751718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD30_RS08335 (NMD30_08285) hisL 1741317..1741367 (-) 51 WP_001364200.1 his operon leader peptide -
  NMD30_RS08340 (NMD30_08290) yeeZ 1741793..1742617 (+) 825 WP_370612716.1 SDR family oxidoreductase -
  NMD30_RS08345 (NMD30_08295) yeeY 1742663..1743592 (+) 930 WP_370612717.1 LysR substrate-binding domain-containing protein -
  NMD30_RS08350 (NMD30_08300) yoeI 1743807..1743869 (+) 63 WP_010723108.1 membrane protein YoeI -
  NMD30_RS08355 (NMD30_08305) plaP 1743859..1745217 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NMD30_RS08360 (NMD30_08310) sbcB 1745291..1746718 (-) 1428 WP_000980586.1 exodeoxyribonuclease I Machinery gene
  NMD30_RS08365 (NMD30_08315) dacD 1746927..1748093 (+) 1167 WP_370612718.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NMD30_RS08370 (NMD30_08320) sbmC 1748212..1748685 (+) 474 WP_370612719.1 DNA gyrase inhibitor SbmC -
  NMD30_RS08375 (NMD30_08325) yeeA 1748884..1749942 (+) 1059 WP_001200891.1 FUSC family protein -
  NMD30_RS08380 (NMD30_08330) tmaR 1750114..1750443 (+) 330 WP_000450409.1 DUF496 family protein -
  NMD30_RS08385 (NMD30_08335) - 1750544..1750987 (-) 444 WP_021292835.1 EutP/PduV family microcompartment system protein -
  NMD30_RS08390 (NMD30_08340) pduU 1750992..1751342 (-) 351 WP_000211395.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54500.81 Da        Isoelectric Point: 5.4720

>NTDB_id=608342 NMD30_RS08360 WP_000980586.1 1745291..1746718(-) (sbcB) [Escherichia coli strain ET201]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=608342 NMD30_RS08360 WP_000980586.1 1745291..1746718(-) (sbcB) [Escherichia coli strain ET201]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTATAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCTAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCATTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGATG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579