Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LCD49_RS07805 Genome accession   NZ_CP083862
Coordinates   1649029..1649655 (+) Length   208 a.a.
NCBI ID   WP_032637053.1    Uniprot ID   A0AAJ6MNH4
Organism   Enterobacter kobei strain 11743-yvys     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1644029..1654655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCD49_RS07785 (LCD49_07795) - 1644427..1646187 (-) 1761 WP_014883250.1 Lon protease family protein -
  LCD49_RS07790 (LCD49_07800) matP 1646374..1646826 (+) 453 WP_023332611.1 macrodomain Ter protein MatP -
  LCD49_RS07795 (LCD49_07805) ompA 1646891..1647946 (-) 1056 WP_014883252.1 porin OmpA -
  LCD49_RS07800 (LCD49_07810) sulA 1648302..1648811 (-) 510 WP_014883253.1 SOS-induced cell division inhibitor SulA -
  LCD49_RS07805 (LCD49_07815) sxy/tfoX 1649029..1649655 (+) 627 WP_032637053.1 TfoX/Sxy family DNA transformation protein Regulator
  LCD49_RS07810 (LCD49_07820) yccS 1649612..1651774 (-) 2163 WP_023332614.1 YccS family putative transporter -
  LCD49_RS07815 (LCD49_07825) - 1651794..1652240 (-) 447 WP_014883256.1 YccF domain-containing protein -
  LCD49_RS07820 (LCD49_07830) helD 1652364..1654418 (+) 2055 WP_045281285.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23930.53 Da        Isoelectric Point: 9.0691

>NTDB_id=608293 LCD49_RS07805 WP_032637053.1 1649029..1649655(+) (sxy/tfoX) [Enterobacter kobei strain 11743-yvys]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAIDDAVFAMVSDGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERCQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARECWLKMRAKN
RALGIKVLFALEGAIEGLHEAALPAGTRRELTEWFNALPEPQKNHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=608293 LCD49_RS07805 WP_032637053.1 1649029..1649655(+) (sxy/tfoX) [Enterobacter kobei strain 11743-yvys]
ATGAAAAAGATATCTTATGAACGGATTTATCAATCCCAGGAATACCTCTCACCGCTAGGAGAAATTCATCATCGCGCACT
GTTCGGTGGCTATACCCTGGCGATAGATGACGCGGTTTTTGCCATGGTGTCAGATGGCGAGCTGTACCTTCGCGCCTGTG
AAGAAAGCGCGAAATACTGTGTAAAAAATGCCGCCTCCTTTTTGACGCTGATGAAACGAGGCCGCCCGGTACTTCTCAAC
TATTACCGTGTCGATGATGGACTGTGGCAAGACAGGGAACGGCTGCTTCAGCTCTCCTCTTTCGCGCTCAATGCGGCGAG
GAAAGAGCGCTGTCAGCGCCATCAACGAAACCGGCTTAAAGATCTGCCAAACCTGACCTTTCAGCTTGAGGTATTACTTT
TTGAAGCTGGCATTACTAACGAAGAGACGCTGCGGGCACTGGGTGCCAGGGAGTGCTGGTTAAAGATGCGGGCTAAAAAT
AGGGCACTCGGTATTAAAGTGCTCTTCGCCCTTGAGGGGGCTATTGAGGGTTTGCATGAGGCGGCACTCCCGGCAGGCAC
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGAAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.143

97.596

0.558