Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NMD31_RS18245 Genome accession   NZ_CP100987
Coordinates   3694145..3694750 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain ET210     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3689145..3699750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD31_RS18225 (NMD31_18140) aes 3689182..3690141 (+) 960 WP_000801850.1 acetyl esterase -
  NMD31_RS18230 (NMD31_18145) hemH 3690138..3691100 (-) 963 WP_001250088.1 ferrochelatase -
  NMD31_RS18235 (NMD31_18150) adk 3691336..3691980 (-) 645 WP_001220233.1 adenylate kinase -
  NMD31_RS18240 (NMD31_18155) htpG 3692161..3694035 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  NMD31_RS18245 (NMD31_18160) recR 3694145..3694750 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  NMD31_RS18250 (NMD31_18165) ybaB 3694750..3695079 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  NMD31_RS18255 (NMD31_18170) dnaX 3695132..3697062 (-) 1931 Protein_3574 DNA polymerase III subunit gamma/tau -
  NMD31_RS18260 (NMD31_18175) apt 3697191..3697742 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  NMD31_RS18265 (NMD31_18180) ybaN 3697895..3698272 (-) 378 WP_001188902.1 DUF454 family protein -
  NMD31_RS18270 (NMD31_18185) priC 3698342..3698869 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  NMD31_RS18275 (NMD31_18190) rsmS 3698883..3699044 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=608283 NMD31_RS18245 WP_001195025.1 3694145..3694750(-) (recR) [Escherichia coli strain ET210]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=608283 NMD31_RS18245 WP_001195025.1 3694145..3694750(-) (recR) [Escherichia coli strain ET210]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443