Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LCD50_RS07475 Genome accession   NZ_CP083857
Coordinates   1593648..1594274 (+) Length   208 a.a.
NCBI ID   WP_032637053.1    Uniprot ID   A0AAJ6MNH4
Organism   Enterobacter kobei strain 12379-yvys     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1588648..1599274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCD50_RS07455 (LCD50_07465) - 1589046..1590806 (-) 1761 WP_196362241.1 AAA family ATPase -
  LCD50_RS07460 (LCD50_07470) matP 1590993..1591445 (+) 453 WP_023332611.1 macrodomain Ter protein MatP -
  LCD50_RS07465 (LCD50_07475) ompA 1591510..1592565 (-) 1056 WP_014883252.1 porin OmpA -
  LCD50_RS07470 (LCD50_07480) sulA 1592921..1593430 (-) 510 WP_014883253.1 SOS-induced cell division inhibitor SulA -
  LCD50_RS07475 (LCD50_07485) sxy/tfoX 1593648..1594274 (+) 627 WP_032637053.1 TfoX/Sxy family DNA transformation protein Regulator
  LCD50_RS07480 (LCD50_07490) yccS 1594231..1596393 (-) 2163 WP_023332614.1 YccS family putative transporter -
  LCD50_RS07485 (LCD50_07495) - 1596413..1596859 (-) 447 WP_014883256.1 YccF domain-containing protein -
  LCD50_RS07490 (LCD50_07500) helD 1596983..1599037 (+) 2055 WP_213782175.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23930.53 Da        Isoelectric Point: 9.0691

>NTDB_id=608270 LCD50_RS07475 WP_032637053.1 1593648..1594274(+) (sxy/tfoX) [Enterobacter kobei strain 12379-yvys]
MKKISYERIYQSQEYLSPLGEIHHRALFGGYTLAIDDAVFAMVSDGELYLRACEESAKYCVKNAASFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERCQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARECWLKMRAKN
RALGIKVLFALEGAIEGLHEAALPAGTRRELTEWFNALPEPQKNHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=608270 LCD50_RS07475 WP_032637053.1 1593648..1594274(+) (sxy/tfoX) [Enterobacter kobei strain 12379-yvys]
ATGAAAAAGATATCTTATGAACGGATTTATCAATCCCAGGAATACCTCTCACCGCTAGGAGAAATTCATCATCGCGCCCT
GTTCGGTGGCTATACCCTGGCGATAGATGACGCGGTTTTTGCCATGGTGTCAGATGGCGAGCTGTACCTTCGCGCCTGTG
AAGAAAGCGCGAAATACTGTGTAAAAAATGCCGCCTCTTTTTTGACGCTGATGAAACGAGGCCGCCCGGTACTTCTCAAC
TATTACCGTGTCGATGATGGACTGTGGCAAGACAGGGAACGGCTGCTTCAGCTCTCCTCTTTCGCGCTCAATGCGGCGAG
GAAAGAGCGCTGTCAGCGCCATCAACGAAACCGGCTTAAAGATCTGCCAAACCTGACCTTTCAGCTTGAGGTATTACTTT
TTGAAGCTGGCATTACTAACGAAGAGACGCTGCGGGCACTGGGTGCCAGGGAGTGCTGGTTAAAGATGCGGGCTAAAAAT
AGGGCACTCGGTATTAAAGTGCTCTTTGCCCTTGAGGGAGCTATTGAGGGTTTGCATGAGGCGGCACTCCCGGCAGGCAC
TCGCCGGGAGTTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGAAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

57.143

97.596

0.558