Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NMD31_RS09780 Genome accession   NZ_CP100987
Coordinates   2025538..2026965 (-) Length   475 a.a.
NCBI ID   WP_000980570.1    Uniprot ID   -
Organism   Escherichia coli strain ET210     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2020538..2031965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD31_RS09750 (NMD31_09710) yeeZ 2020593..2021417 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  NMD31_RS09755 (NMD31_09715) yeeY 2021463..2022392 (+) 930 WP_000803337.1 LysR substrate-binding domain-containing protein -
  NMD31_RS09760 (NMD31_09720) yoeI 2022607..2022669 (+) 63 WP_010723108.1 membrane protein YoeI -
  NMD31_RS09765 (NMD31_09725) plaP 2022659..2024017 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NMD31_RS09770 (NMD31_09730) tsuA 2024196..2025254 (+) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  NMD31_RS09775 (NMD31_09735) tsuB 2025268..2025495 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NMD31_RS09780 (NMD31_09740) sbcB 2025538..2026965 (-) 1428 WP_000980570.1 exodeoxyribonuclease I Machinery gene
  NMD31_RS09785 (NMD31_09745) dacD 2027174..2028340 (+) 1167 WP_001735394.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  NMD31_RS09790 (NMD31_09750) sbmC 2028459..2028932 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  NMD31_RS09795 (NMD31_09755) yeeA 2029130..2030188 (+) 1059 WP_001200905.1 FUSC family protein -
  NMD31_RS09800 (NMD31_09760) tmaR 2030360..2030689 (+) 330 WP_000450409.1 DUF496 family protein -
  NMD31_RS09805 (NMD31_09765) - 2030790..2030924 (-) 135 WP_001297944.1 EutP/PduV family microcompartment system protein -
  NMD31_RS09810 (NMD31_09770) - 2030986..2031683 (+) 698 WP_095033700.1 IS1-like element IS1B family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54529.81 Da        Isoelectric Point: 5.4720

>NTDB_id=608263 NMD31_RS09780 WP_000980570.1 2025538..2026965(-) (sbcB) [Escherichia coli strain ET210]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=608263 NMD31_RS09780 WP_000980570.1 2025538..2026965(-) (sbcB) [Escherichia coli strain ET210]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581