Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LCD45_RS07775 Genome accession   NZ_CP083853
Coordinates   1673473..1674099 (+) Length   208 a.a.
NCBI ID   WP_045334769.1    Uniprot ID   A0A8B2SF67
Organism   Enterobacter roggenkampii strain 12795-yvys     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1668473..1679099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCD45_RS07755 (LCD45_07780) - 1668871..1670631 (-) 1761 WP_023343697.1 AAA family ATPase -
  LCD45_RS07760 (LCD45_07785) matP 1670818..1671270 (+) 453 WP_008499929.1 macrodomain Ter protein MatP -
  LCD45_RS07765 (LCD45_07790) ompA 1671336..1672391 (-) 1056 WP_008499928.1 porin OmpA -
  LCD45_RS07770 (LCD45_07795) sulA 1672746..1673255 (-) 510 WP_023618859.1 SOS-induced cell division inhibitor SulA -
  LCD45_RS07775 (LCD45_07800) sxy/tfoX 1673473..1674099 (+) 627 WP_045334769.1 TfoX/Sxy family DNA transformation protein Regulator
  LCD45_RS07780 (LCD45_07805) yccS 1674056..1676218 (-) 2163 WP_045334767.1 YccS family putative transporter -
  LCD45_RS07785 (LCD45_07810) - 1676238..1676684 (-) 447 WP_023335159.1 YccF domain-containing protein -
  LCD45_RS07790 (LCD45_07815) helD 1676808..1678862 (+) 2055 WP_045334764.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23913.54 Da        Isoelectric Point: 9.7951

>NTDB_id=608249 LCD45_RS07775 WP_045334769.1 1673473..1674099(+) (sxy/tfoX) [Enterobacter roggenkampii strain 12795-yvys]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYRRHQRTRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQESRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=608249 LCD45_RS07775 WP_045334769.1 1673473..1674099(+) (sxy/tfoX) [Enterobacter roggenkampii strain 12795-yvys]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGCGGTTACACCCTGGCGGTCGATGATGCGGTCTTTGCCATGGTGTCCGATGGCGAACTTTACCTTCGCGCGTGTG
AAGAGAGTGCAAAATACTGTGTAAAAAATGCTTCCTCCTTCTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCACTCAGTGCGGCAAG
GAAAGAGCGCTACCGGCGTCATCAACGAACCCGTCTTAAGGATCTGCCGAACCTGACCTTTCAGCTTGAAGTTTTGCTCT
TTGAAGCCGGTATCACCAATGAAGAAACGCTGCGGGCGCTGGGCGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAGAAT
AAGGCACTCAGTATAAAAGTGCTCTTTGCGCTGGAAGGGGCTATCGAAGGGCTGCATGAGGCGGCGCTCCCGGCAGGTAT
CCGCCGGGAACTGACGGAGTGGTTTAATGCGCTGCCTGAGCCGCAGGAGAGTCGTTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B2SF67

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567