Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LCD43_RS20350 Genome accession   NZ_CP083842
Coordinates   4196850..4198283 (+) Length   477 a.a.
NCBI ID   WP_045403547.1    Uniprot ID   -
Organism   Enterobacter asburiae strain 16773-yvys     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4191850..4203283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCD43_RS20320 (LCD43_20345) - 4192417..4193394 (+) 978 WP_023309354.1 calcium/sodium antiporter -
  LCD43_RS20325 (LCD43_20350) kdsD 4193408..4194394 (+) 987 WP_023309355.1 arabinose-5-phosphate isomerase KdsD -
  LCD43_RS20330 (LCD43_20355) kdsC 4194409..4194975 (+) 567 WP_023309356.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  LCD43_RS20335 (LCD43_20360) lptC 4194972..4195547 (+) 576 WP_023309357.1 LPS export ABC transporter periplasmic protein LptC -
  LCD43_RS20340 (LCD43_20365) lptA 4195516..4196070 (+) 555 WP_023309358.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  LCD43_RS20345 (LCD43_20370) lptB 4196077..4196802 (+) 726 WP_023309359.1 LPS export ABC transporter ATP-binding protein -
  LCD43_RS20350 (LCD43_20375) rpoN/rpoN1 4196850..4198283 (+) 1434 WP_045403547.1 RNA polymerase factor sigma-54 Machinery gene
  LCD43_RS20355 (LCD43_20380) hpf 4198306..4198593 (+) 288 WP_008501444.1 ribosome hibernation promoting factor -
  LCD43_RS20360 (LCD43_20385) ptsN 4198676..4199167 (+) 492 WP_008501443.1 PTS IIA-like nitrogen regulatory protein PtsN -
  LCD43_RS20365 (LCD43_20390) rapZ 4199213..4200067 (+) 855 WP_014885397.1 RNase adapter RapZ -
  LCD43_RS20370 (LCD43_20395) npr 4200064..4200336 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  LCD43_RS20375 (LCD43_20400) mtgA 4200376..4201101 (-) 726 WP_045403550.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  LCD43_RS20380 (LCD43_20405) elbB 4201098..4201751 (-) 654 WP_045403552.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54183.92 Da        Isoelectric Point: 4.3173

>NTDB_id=608216 LCD43_RS20350 WP_045403547.1 4196850..4198283(+) (rpoN/rpoN1) [Enterobacter asburiae strain 16773-yvys]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDTQQSQDTEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDD
ILESMGDEEIELEEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWIDEARLIISDHLDLLANHDFRSLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNDRWVVELNSDSIPRLQINQQYASMCTSARNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=608216 LCD43_RS20350 WP_045403547.1 4196850..4198283(+) (rpoN/rpoN1) [Enterobacter asburiae strain 16773-yvys]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAACTGGCGATGACGCCGCAGCTACAGCAGGCAATTCGCCTGTTGCA
GCTGTCCACGTTAGAACTTCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAACCCCCTGCTGGAACAAACCGATCTTCATG
ACGAGGTAGATACTCAGCAGTCACAGGATACAGAAGCGCTCGACACCGCGGATGCACTCGAACAAAAAGAGATGCCCGAC
GAGCTACCGCTGGATGCCAGCTGGGATGAAATCTACACCGCCGGAACCCCTTCCGGTACGCGTGCAGACTACCAGGATGA
TGAGCTACCGGTCTACCAGGGTGAGACCACCCAGTCGCTGCAGGATTACCTGATGTGGCAGGTGGAACTCACCCCCTTCT
CCGATACCGACCGTGCGATTGCCACCTCAATTGTCGATGCCGTTGACGACACCGGCTATTTGACCGTCACGCTGGACGAT
ATTCTGGAAAGCATGGGCGACGAAGAGATTGAGCTTGAGGAAGTCGAAGCCGTTCTGAAGCGCATCCAGCGTTTCGATCC
GGTAGGCGTGGCCGCAAAAGATCTGCGCGACTGCCTGCTGATCCAGCTTTCTCAGTTCAGCAAAGAGACGCCATGGATCG
ACGAGGCGCGCTTAATCATCAGCGATCATCTGGATCTGTTGGCCAACCACGATTTCCGCAGCCTGATGCGCGTCACGCGG
CTGAAGGAAGAGGTGCTGAAAGAAGCGGTGAATCTGATCCAGTCGCTCGATCCGCGCCCGGGACAGTCGATCCAGACCAG
CGAGCCCGAGTACGTCATCCCGGACGTGCTGGTCAGAAAACACAATGACCGCTGGGTCGTTGAACTGAACTCAGACAGCA
TCCCTCGCCTGCAAATCAACCAGCAGTATGCCTCCATGTGCACCAGCGCGCGTAACGACTCCGACAATCAATATATTCGC
AGCAATCTTCAGGAAGCGCGATGGCTGATCAAAAGTCTGGAGAGCCGAAATGATACGCTGCTACGCGTCAGCCGCTGTAT
TGTTGAACAGCAGCAGGCGTTCTTTGAGCAGGGCGAAGAGTATATGAAACCGATGGTACTGGCGGATATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGTGTCACCACGCAGAAGTATCTGCACAGTCCACGCGGTATTTTTGAGCTTAAG
TATTTCTTCTCCAGCCATGTGAATACCGAGGGCGGCGGCGAAGCGTCGTCAACGGCCATTCGTGCCCTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCACTAAGCGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCCAACCAGCGTAAACAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.545

100

0.482