Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LCD43_RS07650 Genome accession   NZ_CP083842
Coordinates   1608936..1609562 (+) Length   208 a.a.
NCBI ID   WP_023311030.1    Uniprot ID   A0A1Z3N2L7
Organism   Enterobacter asburiae strain 16773-yvys     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1603936..1614562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCD43_RS07630 (LCD43_07635) - 1604336..1606096 (-) 1761 WP_045401666.1 Lon protease family protein -
  LCD43_RS07635 (LCD43_07640) matP 1606283..1606735 (+) 453 WP_008499929.1 macrodomain Ter protein MatP -
  LCD43_RS07640 (LCD43_07645) ompA 1606799..1607854 (-) 1056 WP_023311028.1 porin OmpA -
  LCD43_RS07645 (LCD43_07650) sulA 1608209..1608718 (-) 510 WP_032668147.1 SOS-induced cell division inhibitor SulA -
  LCD43_RS07650 (LCD43_07655) sxy/tfoX 1608936..1609562 (+) 627 WP_023311030.1 TfoX/Sxy family DNA transformation protein Regulator
  LCD43_RS07655 (LCD43_07660) yccS 1609519..1611681 (-) 2163 WP_045401669.1 YccS family putative transporter -
  LCD43_RS07660 (LCD43_07665) - 1611701..1612147 (-) 447 WP_023311032.1 YccF domain-containing protein -
  LCD43_RS07665 (LCD43_07670) helD 1612271..1614325 (+) 2055 WP_045401671.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23906.46 Da        Isoelectric Point: 9.4588

>NTDB_id=608204 LCD43_RS07650 WP_023311030.1 1608936..1609562(+) (sxy/tfoX) [Enterobacter asburiae strain 16773-yvys]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=608204 LCD43_RS07650 WP_023311030.1 1608936..1609562(+) (sxy/tfoX) [Enterobacter asburiae strain 16773-yvys]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCCCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGAGGCTATACCCTGGCGGTGGATGATGCGGTTTTTGCCATGGTGTCAGACGGAGAGCTTTATCTTCGCGCCTGTG
AGGAGAGTGCGAAATACTGTGTAAAAAATGCCTCCTCTTTTTTAACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGATGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCGCTCAGTGCGGCAAG
AAAAGAACGCTATCAGCGCCATCAACGAAACCGACTTAAGGATCTGCCAAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
TTGAAGCTGGCATCACCAATGAGGAAACGCTGCGGGCGCTGGGTGCAAGAGCGAGCTGGCTAAAGATGCGGGCAAAAAAC
AAAGCGCTCAGTATTAAAGTTCTCTTCGCGCTGGAAGGGGCTATCGAGGGGCTGCATGAGGCGGCACTCCCGGCAGGCAT
TCGCCGGGAGCTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z3N2L7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567