Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LCD48_RS21090 Genome accession   NZ_CP083834
Coordinates   4301905..4303338 (+) Length   477 a.a.
NCBI ID   WP_023309360.1    Uniprot ID   A0A1Z3N130
Organism   Enterobacter asburiae strain AR0468-yvys     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4296905..4308338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCD48_RS21060 (LCD48_21060) - 4297472..4298449 (+) 978 WP_039260412.1 calcium/sodium antiporter -
  LCD48_RS21065 (LCD48_21065) kdsD 4298463..4299449 (+) 987 WP_023333606.1 arabinose-5-phosphate isomerase KdsD -
  LCD48_RS21070 (LCD48_21070) kdsC 4299464..4300030 (+) 567 WP_023309356.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  LCD48_RS21075 (LCD48_21075) lptC 4300027..4300602 (+) 576 WP_023309357.1 LPS export ABC transporter periplasmic protein LptC -
  LCD48_RS21080 (LCD48_21080) lptA 4300571..4301125 (+) 555 WP_045888046.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  LCD48_RS21085 (LCD48_21085) lptB 4301132..4301857 (+) 726 WP_033146751.1 LPS export ABC transporter ATP-binding protein -
  LCD48_RS21090 (LCD48_21090) rpoN/rpoN1 4301905..4303338 (+) 1434 WP_023309360.1 RNA polymerase factor sigma-54 Machinery gene
  LCD48_RS21095 (LCD48_21095) hpf 4303361..4303648 (+) 288 WP_008501444.1 ribosome hibernation promoting factor -
  LCD48_RS21100 (LCD48_21100) ptsN 4303731..4304222 (+) 492 WP_008501443.1 PTS IIA-like nitrogen regulatory protein PtsN -
  LCD48_RS21105 (LCD48_21105) rapZ 4304268..4305122 (+) 855 WP_014885397.1 RNase adapter RapZ -
  LCD48_RS21110 (LCD48_21110) npr 4305119..4305391 (+) 273 WP_003861872.1 PTS phosphocarrier protein NPr -
  LCD48_RS21115 (LCD48_21115) mtgA 4305431..4306156 (-) 726 WP_039260411.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  LCD48_RS21120 (LCD48_21120) elbB 4306153..4306806 (-) 654 WP_039260518.1 isoprenoid biosynthesis glyoxalase ElbB -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54169.89 Da        Isoelectric Point: 4.3149

>NTDB_id=608193 LCD48_RS21090 WP_023309360.1 4301905..4303338(+) (rpoN/rpoN1) [Enterobacter asburiae strain AR0468-yvys]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALDSNPLLEQTDLHDEVDTQQSQDTEALDTADALEQKEMPD
ELPLDASWDEIYTAGTPSGTRADYQDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVTLDD
ILESMGDDEIELEEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFSKETPWIDEARLIISDHLDLLANHDFRSLMRVTR
LKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKHNDRWVVELNSDSIPRLQINQQYASMCTSARNDSDNQYIR
SNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTTMLSDQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=608193 LCD48_RS21090 WP_023309360.1 4301905..4303338(+) (rpoN/rpoN1) [Enterobacter asburiae strain AR0468-yvys]
ATGAAGCAAGGTTTGCAATTAAGGCTCAGCCAACAACTGGCAATGACGCCGCAGCTACAGCAGGCAATTCGCCTGTTGCA
ACTGTCCACGTTAGAACTTCAGCAGGAGCTCCAGCAGGCGCTGGACAGCAACCCCCTGCTGGAACAAACCGATCTTCATG
ACGAGGTAGATACTCAGCAGTCACAGGATACAGAAGCGCTCGACACCGCGGATGCACTCGAACAAAAAGAGATGCCCGAC
GAGCTACCGCTGGATGCCAGCTGGGATGAAATCTACACCGCCGGAACCCCTTCCGGTACGCGTGCAGACTACCAGGATGA
TGAGCTACCGGTCTATCAGGGAGAAACCACCCAGTCGCTGCAGGATTACCTGATGTGGCAGGTGGAACTTACCCCCTTCT
CCGATACCGACCGCGCGATTGCCACCTCAATTGTCGATGCCGTTGACGACACCGGCTATTTGACCGTCACGCTGGACGAT
ATCCTGGAAAGCATGGGCGACGACGAAATTGAGCTTGAGGAAGTCGAAGCCGTACTGAAGCGCATCCAGCGTTTCGATCC
GGTAGGCGTGGCCGCAAAAGATCTGCGCGACTGCCTGCTGATCCAGCTATCTCAGTTCAGCAAAGAGACGCCATGGATCG
ACGAGGCGCGCTTAATTATTAGCGATCATCTGGATCTGCTGGCCAACCACGATTTCCGCTCCCTGATGCGCGTCACGCGC
CTGAAGGAAGAGGTGCTGAAAGAAGCGGTAAATCTGATTCAGTCGCTCGATCCGCGCCCGGGACAGTCGATCCAGACCAG
CGAGCCCGAGTACGTCATCCCGGACGTGCTGGTGAGAAAACACAATGACCGCTGGGTCGTTGAACTGAATTCAGACAGCA
TCCCTCGCCTGCAAATCAACCAGCAGTATGCCTCCATGTGCACCAGCGCGCGTAACGACTCCGACAATCAATATATTCGC
AGCAATCTTCAGGAAGCGCGATGGCTGATCAAAAGTCTGGAGAGCCGAAATGATACGCTGCTGCGCGTCAGCCGCTGTAT
TGTCGAACAGCAGCAGGCGTTCTTTGAGCAGGGTGAAGAGTATATGAAACCGATGGTACTGGCGGATATCGCCCAGGCCG
TCGAGATGCATGAATCAACCATTTCCCGTGTCACCACGCAGAAGTATCTGCACAGTCCACGCGGTATATTTGAGCTTAAG
TATTTCTTCTCCAGCCATGTGAATACCGAGGGCGGCGGCGAAGCGTCGTCAACGGCCATTCGTGCCCTGGTGAAGAAGTT
GATCGCCGCGGAGAACCCCGCGAAGCCACTAAGCGACAGTAAGTTAACCACCATGCTGTCCGATCAGGGTATTATGGTGG
CACGTCGTACTGTTGCGAAGTATCGAGAGTCTTTATCCATTCCGCCGTCCAACCAGCGTAAACAGCTGGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z3N130

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.347

100

0.48